HLA diversity in the 1000 genomes dataset von Gourraud, Pierre-Antoine, Khankhanian, Pouya, Cereb, Nezih, Yang, Soo Young, Feolo, Michael, Maiers, Martin, Rioux, John D, Hauser, Stephen, Oksenberg, Jorge

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Impaired autophagy of an intracellular pathogen induced by a Crohn's disease associated ATG16L1 variant von Kuballa, Petric, Huett, Alan, Rioux, John D, Daly, Mark J, Xavier, Ramnik J

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Prostaglandins and calprotectin are genetically and functionally linked to the Inflammatory Bowel Diseases von Karaky, Mohamad, Boucher, Gabrielle, Mola, Saraï, Foisy, Sylvain, Beauchamp, Claudine, Rivard, Marie-Eve, Burnette, Melanie, Gosselin, Hugues, Bitton, Alain, Charron, Guy, Goyette, Philippe, Rioux, John D

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Defining the role of the MHC in autoimmunity: a review and pooled analysis von Fernando, Michelle M A, Stevens, Christine R, Walsh, Emily C, De Jager, Philip L, Goyette, Philippe, Plenge, Robert M, Vyse, Timothy J, Rioux, John D

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IL23R (Interleukin 23 Receptor) Variants Protective against Inflammatory Bowel Diseases (IBD) Display Loss of Function due to Impaired Protein Stability and Intracellular Trafficki... von Sivanesan, Durga, Beauchamp, Claudine, Quinou, Christiane, Lee, Jonathan, Lesage, Sylvie, Chemtob, Sylvain, Rioux, John D., Michnick, Stephen W.

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A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease von Festen, Eleonora A M, Goyette, Philippe, Green, Todd, Boucher, Gabrielle, Beauchamp, Claudine, Trynka, Gosia, Dubois, Patrick C, Lagacé, Caroline, Stokkers, Pieter C F, Hommes, Daan W, Barisani, Donatella, Palmieri, Orazio, Annese, Vito, van Heel, David A, Weersma, Rinse K, Daly, Mark J, Wijmenga, Cisca, Rioux, John D

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Ubiquitin Ligase TRIM62 Regulates CARD9-Mediated Anti-fungal Immunity and Intestinal Inflammation von Cao, Zhifang, Conway, Kara L., Heath, Robert J., Rush, Jason S., Leshchiner, Elizaveta S., Ramirez-Ortiz, Zaida G., Nedelsky, Natalia B., Huang, Hailiang, Ng, Aylwin, Gardet, Agnès, Cheng, Shih-Chin, Shamji, Alykhan F., Rioux, John D., Wijmenga, Cisca, Netea, Mihai G., Means, Terry K., Daly, Mark J., Xavier, Ramnik J.

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A transcriptome-based approach to identify functional modules within and across primary human immune cells von Mola, Saraï, Foisy, Sylvain, Boucher, Gabrielle, Major, François, Beauchamp, Claudine, Karaky, Mohamad, Goyette, Philippe, Lesage, Sylvie, Rioux, John D

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Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis von Rioux, John D, Xavier, Ramnik J, Taylor, Kent D, Silverberg, Mark S, Goyette, Philippe, Huett, Alan, Green, Todd, Kuballa, Petric, Barmada, M Michael, Datta, Lisa Wu, Shugart, Yin Yao, Griffiths, Anne M, Targan, Stephan R, Ippoliti, Andrew F, Bernard, Edmond-Jean, Mei, Ling, Nicolae, Dan L, Regueiro, Miguel, Schumm, L Philip, Steinhart, A Hillary, Rotter, Jerome I, Duerr, Richard H, Cho, Judy H, Daly, Mark J, Brant, Steven R

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Common variants in the NLRP3 region contribute to Crohn's disease susceptibility von Villani, Alexandra-Chloé, Lemire, Mathieu, Fortin, Geneviève, Louis, Edouard, Silverberg, Mark S, Collette, Catherine, Baba, Nobuyasu, Libioulle, Cécile, Belaiche, Jacques, Bitton, Alain, Gaudet, Daniel, Cohen, Albert, Langelier, Diane, Fortin, Paul R, Wither, Joan E, Sarfati, Marika, Rutgeerts, Paul, Rioux, John D, Vermeire, Severine, Hudson, Thomas J, Franchimont, Denis

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Construction and benchmarking of a multi-ethnic reference panel for the imputation of HLA class I and II alleles von Degenhardt, Frauke, Wendorff, Mareike, Wittig, Michael, Ellinghaus, Eva, Datta, Lisa W, Schembri, John, Ng, Siew C, Rosati, Elisa, Hübenthal, Matthias, Ellinghaus, David, Jung, Eun Suk, Lieb, Wolfgang, Abedian, Shifteh, Malekzadeh, Reza, Cheon, Jae Hee, Ellul, Pierre, Sood, Ajit, Midha, Vandana, Thelma, B K, Wong, Sunny H, Schreiber, Stefan, Yamazaki, Keiko, Kubo, Michiaki, Boucher, Gabrielle, Rioux, John D, Lenz, Tobias L, Brant, Steven R, Franke, Andre

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Inflammatory bowel disease patient perceptions of diagnostic and monitoring tests and procedures von Noiseux, Isabelle, Veilleux, Sophie, Bitton, Alain, Kohen, Rita, Vachon, Luc, White Guay, Brian, Rioux, John D

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High-resolution haplotype structure in the human genome von Daly, Mark J., Rioux, John D., Schaffner, Stephen F., Hudson, Thomas J., Lander, Eric S.

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A Metabolic Signature of Mitochondrial Dysfunction Revealed through a Monogenic Form of Leigh Syndrome von Thompson Legault, Julie, Strittmatter, Laura, Tardif, Jessica, Sharma, Rohit, Tremblay-Vaillancourt, Vanessa, Aubut, Chantale, Boucher, Gabrielle, Clish, Clary B., Cyr, Denis, Daneault, Caroline, Waters, Paula J., Aliskashani, Azadeh, Allen, Bruce G., Aubut, Chantale, Beauchamp, Claudine, Bemeur, Chantal, Burelle, Yan, Charron, Guy, Coderre, Lise, Des Rosiers, Christine, Deschênes, Sonia, Labarthe, François, Landry, Jeannine, Laprise, Catherine, Lavallée, Geneviève, Lavoie, Pierre, Maranda, Bruno, Morin, Charles, Mukaneza, Yvette, Nishimura, Tamiko, Rioux, John D., Rivard, Marie-Ève, Sasarman, Florin, Shoubridge, Eric A., Tardif, Jessica, Thompson Legault, Julie, Tremblay, Nancy, Tremblay-Vaillancourt, Vanessa, Vachon, Luc, Villeneuve, Josée, Vachon, Luc, Morin, Charles, Laprise, Catherine, Rioux, John D., Mootha, Vamsi K., Des Rosiers, Christine

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Paths to understanding the genetic basis of autoimmune disease von Rioux, John D., Abbas, Abul K.

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A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC von de Bakker, Paul I W, McVean, Gil, Sabeti, Pardis C, Miretti, Marcos M, Green, Todd, Marchini, Jonathan, Ke, Xiayi, Monsuur, Alienke J, Whittaker, Pamela, Delgado, Marcos, Morrison, Jonathan, Richardson, Angela, Walsh, Emily C, Gao, Xiaojiang, Galver, Luana, Hart, John, Hafler, David A, Pericak-Vance, Margaret, Todd, John A, Daly, Mark J, Trowsdale, John, Wijmenga, Cisca, Vyse, Tim J, Beck, Stephan, Murray, Sarah Shaw, Carrington, Mary, Gregory, Simon, Deloukas, Panos, Rioux, John D

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Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients von Wu, Yiming, Gettler, Kyle, Kars, Meltem Ece, Giri, Mamta, Li, Dalin, Bayrak, Cigdem Sevim, Zhang, Peng, Jain, Aayushee, Maffucci, Patrick, Sabic, Ksenija, Van Vleck, Tielman, Nadkarni, Girish, Denson, Lee A., Ostrer, Harry, Levine, Adam P., Schiff, Elena R., Segal, Anthony W., Kugathasan, Subra, Stenson, Peter D., Cooper, David N., Philip Schumm, L., Snapper, Scott, Daly, Mark J., Haritunians, Talin, Duerr, Richard H., Silverberg, Mark S., Rioux, John D., Brant, Steven R., McGovern, Dermot P. B., Cho, Judy H., Itan, Yuval

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Human induced pluripotent stem cells (hiPSCs) derived cells reflect tissue specificity found in patients with Leigh syndrome French Canadian variant (LSFC) von Gélinas, Roselle, Lévesque, Chloé, Thompson Legault, Julie, Rivard, Marie-Eve, Villeneuve, Louis, Laprise, Catherine, Rioux, John D

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The dichotomous pattern of IL-12r and IL-23R expression elucidates the role of IL-12 and IL-23 in inflammation von Chognard, Gaëlle, Bellemare, Lisa, Pelletier, Adam-Nicolas, Dominguez-Punaro, Maria C, Beauchamp, Claudine, Guyon, Marie-Josée, Charron, Guy, Morin, Nicolas, Sivanesan, Durga, Kuchroo, Vijay, Xavier, Ramnik, Michnick, Stephen W, Chemtob, Sylvain, Rioux, John D, Lesage, Sylvie

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Polymorphism at the TNF superfamily gene TNFSF4 confers susceptibility to systemic lupus erythematosus von Graham, Deborah S Cunninghame, Graham, Robert R, Manku, Harinder, Wong, Andrew K, Whittaker, John C, Gaffney, Patrick M, Moser, Kathy L, Rioux, John D, Altshuler, David, Behrens, Timothy W, Vyse, Timothy J

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