“Cat’s Cradling” the 3D Genome by the Act of LncRNA Transcription von Melé, Marta, Rinn, John L.

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Long Noncoding RNAs: Molecular Modalities to Organismal Functions von Rinn, John L, Chang, Howard Y

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Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs von Hangauer, Matthew J, Vaughn, Ian W, McManus, Michael T

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Improving RNA-Seq expression estimates by correcting for fragment bias von Roberts, Adam, Trapnell, Cole, Donaghey, Julie, Rinn, John L, Pachter, Lior

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Discovery and annotation of long noncoding RNAs von Mattick, John S, Rinn, John L

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Genome Regulation by Long Noncoding RNAs von Rinn, John L, Chang, Howard Y

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Modular regulatory principles of large non-coding RNAs von Guttman, Mitchell, Rinn, John L.

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Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution von Cabili, Moran N, Dunagin, Margaret C, McClanahan, Patrick D, Biaesch, Andrew, Padovan-Merhar, Olivia, Regev, Aviv, Rinn, John L, Raj, Arjun

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Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution von Briggs, James A., Wolvetang, Ernst J., Mattick, John S., Rinn, John L., Barry, Guy

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lncRNAs: linking RNA to chromatin von Rinn, John L

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Large non-coding RNAs: missing links in cancer? von Huarte, Maite, Rinn, John L.

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From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo von Andergassen, Daniel, Rinn, John L.

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DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex von Molyneaux, Bradley J, Goff, Loyal A, Brettler, Andrea C, Chen, Hsu-Hsin, Hrvatin, Siniša, Rinn, John L, Arlotta, Paola

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Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks von Kelley, David R, Snoek, Jasper, Rinn, John L

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The MicroRNA miR-181 Is a Critical Cellular Metabolic Rheostat Essential for NKT Cell Ontogenesis and Lymphocyte Development and Homeostasis von Henao-Mejia, Jorge, Williams, Adam, Goff, Loyal A., Staron, Matthew, Licona-Limón, Paula, Kaech, Susan M., Nakayama, Maki, Rinn, John L., Flavell, Richard A.

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The multilayered complexity of ceRNA crosstalk and competition von Tay, Yvonne, Rinn, John, Pandolfi, Pier Paolo

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Linking RNA biology to lncRNAs von Goff, Loyal A, Rinn, John L

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A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs von Choi, Jiho, Lee, Soohyun, Mallard, William, Clement, Kendell, Tagliazucchi, Guidantonio Malagoli, Lim, Hotae, Choi, In Young, Ferrari, Francesco, Tsankov, Alexander M, Pop, Ramona, Lee, Gabsang, Rinn, John L, Meissner, Alexander, Park, Peter J, Hochedlinger, Konrad

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Dissecting neural differentiation regulatory networks through epigenetic footprinting von Ziller, Michael J., Edri, Reuven, Yaffe, Yakey, Donaghey, Julie, Pop, Ramona, Mallard, William, Issner, Robbyn, Gifford, Casey A., Goren, Alon, Xing, Jeffrey, Gu, Hongcang, Cacchiarelli, Davide, Tsankov, Alexander M., Epstein, Charles, Rinn, John L., Mikkelsen, Tarjei S., Kohlbacher, Oliver, Gnirke, Andreas, Bernstein, Bradley E., Elkabetz, Yechiel, Meissner, Alexander

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Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular Atrophy von Ng, Shi-Yan, Soh, Boon Seng, Rodriguez-Muela, Natalia, Hendrickson, David G., Price, Feodor, Rinn, John L., Rubin, Lee L.

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