Somatic retrotransposition alters the genetic landscape of the human brain von Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan, Paul M., Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A., Faulkner, Geoffrey J.

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Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond von Mascher, Martin, Richmond, Todd A., Gerhardt, Daniel J., Himmelbach, Axel, Clissold, Leah, Sampath, Dharanya, Ayling, Sarah, Steuernagel, Burkhard, Pfeifer, Matthias, D'Ascenzo, Mark, Akhunov, Eduard D., Hedley, Pete E., Gonzales, Ana M., Morrell, Peter L., Kilian, Benjamin, Blattner, Frank R., Scholz, Uwe, Mayer, Klaus F.X., Flavell, Andrew J., Muehlbauer, Gary J., Waugh, Robbie, Jeddeloh, Jeffrey A., Stein, Nils

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Genetic Perturbation of the Maize Methylome von Li, Qing, Eichten, Steven R., Hermanson, Peter J., Zaunbrecher, Virginia M., Song, Jawon, Wendt, Jennifer, Rosenbaum, Heidi, Madzima, Thelma F., Sloan, Amy E., Huang, Ji, Burgess, Daniel L., Richmond, Todd A., McGinnis, Karen M., Meeley, Robert B., Danilevskaya, Olga N., Vaughn, Matthew W., Kaeppler, Shawn M., Jeddeloh, Jeffrey A., Springer, Nathan M.

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Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements von Dostie, Josée, Richmond, Todd A, Arnaout, Ramy A, Selzer, Rebecca R, Lee, William L, Honan, Tracey A, Rubio, Eric D, Krumm, Anton, Lamb, Justin, Nusbaum, Chad, Green, Roland D, Dekker, Job

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Direct selection of human genomic loci by microarray hybridization von Albert, Thomas J, Gibbs, Richard A, Molla, Michael N, Muzny, Donna M, Nazareth, Lynne, Wheeler, David, Song, Xingzhi, Richmond, Todd A, Middle, Chris M, Rodesch, Matthew J, Packard, Charles J, Weinstock, George M

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A high-resolution map of active promoters in the human genome von Ren, Bing, Kim, Tae Hoon, Barrera, Leah O, Zheng, Ming, Qu, Chunxu, Singer, Michael A, Richmond, Todd A, Wu, Yingnian, Green, Roland D

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Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome von Eichler, Evan E, Sharp, Andrew J, Hansen, Sierra, Selzer, Rebecca R, Cheng, Ze, Regan, Regina, Hurst, Jane A, Stewart, Helen, Price, Sue M, Blair, Edward, Hennekam, Raoul C, Fitzpatrick, Carrie A, Segraves, Rick, Richmond, Todd A, Guiver, Cheryl, Albertson, Donna G, Pinkel, Daniel, Eis, Peggy S, Schwartz, Stuart, Knight, Samantha J L

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Comparative isoschizomer profiling of cytosine methylation: the HELP assay von Khulan, Batbayar, Thompson, Reid F, Ye, Kenny, Fazzari, Melissa J, Suzuki, Masako, Stasiek, Edyta, Figueroa, Maria E, Glass, Jacob L, Chen, Quan, Montagna, Cristina, Hatchwell, Eli, Selzer, Rebecca R, Richmond, Todd A, Green, Roland D, Melnick, Ari, Greally, John M

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A high-resolution map of segmental DNA copy number variation in the mouse genome von Graubert, Timothy A, Cahan, Patrick, Edwin, Deepa, Selzer, Rebecca R, Richmond, Todd A, Eis, Peggy S, Shannon, William D, Li, Xia, McLeod, Howard L, Cheverud, James M, Ley, Timothy J

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Progressive multifocal leukoencephalopathy genetic risk variants for pharmacovigilance of immunosuppressant therapies von Hatchwell, Eli, Smith, 3rd, Edward B, Jalilzadeh, Shapour, Bruno, Christopher D, Taoufik, Yassine, Hendel-Chavez, Houria, Liblau, Roland, Brassat, David, Martin-Blondel, Guillaume, Wiendl, Heinz, Schwab, Nicholas, Cortese, Irene, Monaco, Maria Chiara, Imberti, Luisa, Capra, Ruggero, Oksenberg, Jorge R, Gasnault, Jacques, Stankoff, Bruno, Richmond, Todd A, Rancour, David M, Koralnik, Igor J, Hanson, Barbara A, Major, Eugene O, Chow, Christina R, Eis, Peggy S

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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays von Stamatoyannopoulos, John A, Sabo, Peter J, Kuehn, Michael S, Thurman, Robert, Johnson, Brett E, Johnson, Ericka M, Cao, Hua, Yu, Man, Rosenzweig, Elizabeth, Goldy, Jeff, Haydock, Andrew, Weaver, Molly, Shafer, Anthony, Lee, Kristin, Neri, Fidencio, Humbert, Richard, Singer, Michael A, Richmond, Todd A, Dorschner, Michael O, McArthur, Michael, Hawrylycz, Michael, Green, Roland D, Navas, Patrick A, Noble, William S

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Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH von Selzer, Rebecca R., Richmond, Todd A., Pofahl, Nathan J., Green, Roland D., Eis, Peggy S., Nair, Prakash, Brothman, Arthur R., Stallings, Raymond L.

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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing von Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., Xu, Joshua

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Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori von Albert, Thomas J, Berg, Douglas E, Dailidiene, Daiva, Dailide, Giedrius, Norton, Jason E, Kalia, Awdhesh, Richmond, Todd A, Molla, Michael, Singh, Jaz, Green, Roland D

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Germline Genetic Risk Variants for Progressive Multifocal Leukoencephalopathy von Eis, Peggy S, Bruno, Christopher D, Richmond, Todd A, Koralnik, Igor J, Hanson, Barbara A, Major, Eugene O, Chow, Christina R, Hendel-Chavez, Houria, Stankoff, Bruno, Gasnault, Jacques, Taoufik, Yassine, Hatchwell, Eli

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Southern‐by‐Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops von Zastrow‐Hayes, Gina M., Lin, Haining, Sigmund, Amy L., Hoffman, Jenna L., Alarcon, Clara M., Hayes, Kevin R., Richmond, Todd A., Jeddeloh, Jeffery A., May, Gregory D., Beatty, Mary K.

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Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal von Turajlic, Samra, Xu, Hang, Litchfield, Kevin, Rowan, Andrew, Chambers, Tim, Lopez, Jose I., Nicol, David, O’Brien, Tim, Larkin, James, Horswell, Stuart, Stares, Mark, Au, Lewis, Jamal-Hanjani, Mariam, Challacombe, Ben, Chandra, Ashish, Hazell, Steve, Eichler-Jonsson, Claudia, Soultati, Aspasia, Chowdhury, Simon, Rudman, Sarah, Lynch, Joanna, Fernando, Archana, Stamp, Gordon, Nye, Emma, Jabbar, Faiz, Spain, Lavinia, Lall, Sharanpreet, Guarch, Rosa, Falzon, Mary, Proctor, Ian, Pickering, Lisa, Gore, Martin, Watkins, Thomas B.K., Ward, Sophia, Stewart, Aengus, DiNatale, Renzo, Becerra, Maria F., Reznik, Ed, Hsieh, James J., Richmond, Todd A., Mayhew, George F., Hill, Samantha M., McNally, Catherine D., Jones, Carol, Rosenbaum, Heidi, Stanislaw, Stacey, Burgess, Daniel L., Alexander, Nelson R., Swanton, Charles

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA von Willey, James C., Morrison, Tom B., Austermiller, Bradley, Crawford, Erin L., Craig, Daniel J., Blomquist, Thomas M., Jones, Wendell D., Wali, Aminah, Lococo, Jennifer S., Haseley, Nathan, Richmond, Todd A., Novoradovskaya, Natalia, Kusko, Rebecca, Chen, Guangchun, Li, Quan-Zhen, Johann, Donald J., Deveson, Ira W., Mercer, Timothy R., Wu, Leihong, Xu, Joshua

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Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays von Matejková, Petra, Strouhal, Michal, Smajs, David, Norris, Steven J, Palzkill, Timothy, Petrosino, Joseph F, Sodergren, Erica, Norton, Jason E, Singh, Jaz, Richmond, Todd A, Molla, Michael N, Albert, Thomas J, Weinstock, George M

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Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays von Wong, Christopher W, Albert, Thomas J, Vega, Vinsensius B, Norton, Jason E, Cutler, David J, Richmond, Todd A, Stanton, Lawrence W, Liu, Edison T, Miller, Lance D

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