MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms von Zickmann, Franziska, Renard, Bernhard Y

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DUDes: a top-down taxonomic profiler for metagenomics von Piro, Vitor C, Lindner, Martin S, Renard, Bernhard Y

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MpoxRadar: a worldwide MPXV genomic surveillance dashboard von Nasri, Ferdous, Kongkitimanon, Kunaphas, Wittig, Alice, Cortés, Jorge Sánchez, Brinkmann, Annika, Nitsche, Andreas, Schmachtenberg , Anna-Juliane, Renard, Bernhard Y, Fuchs, Stephan

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Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation von Seiler, Enrico, Trappe, Kathrin, Renard, Bernhard Y

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Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters von Jandrasits, Christine, Kröger, Stefan, Haas, Walter, Renard, Bernhard Y

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Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2 von Miranda, Fábio M, Azevedo, Vasco C, Ramos, Rommel J, Renard, Bernhard Y, Piro, Vitor C

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seq-seq-pan: building a computational pan-genome data structure on whole genome alignment von Jandrasits, Christine, Dabrowski, Piotr W, Fuchs, Stephan, Renard, Bernhard Y

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The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components von Aeberhard, Lukas, Banhart, Sebastian, Fischer, Martina, Jehmlich, Nico, Rose, Laura, Koch, Sophia, Laue, Michael, Renard, Bernhard Y, Schmidt, Frank, Heuer, Dagmar

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Parasitic Nematodes Exert Antimicrobial Activity and Benefit From Microbiota-Driven Support for Host Immune Regulation von Rausch, Sebastian, Midha, Ankur, Kuhring, Matthias, Affinass, Nicole, Radonic, Aleksandar, Kühl, Anja A, Bleich, André, Renard, Bernhard Y, Hartmann, Susanne

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iPiG: integrating peptide spectrum matches into genome browser visualizations von Kuhring, Mathias, Renard, Bernhard Y

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Metagenomic profiling of known and unknown microbes with microbeGPS von Lindner, Martin S, Renard, Bernhard Y

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Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? von Muth, Thilo, Renard, Bernhard Y

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MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling von Piro, Vitor C, Matschkowski, Marcel, Renard, Bernhard Y

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LazyFox: fast and parallelized overlapping community detection in large graphs von Garrels, Tim, Khodabakhsh, Athar, Renard, Bernhard Y, Baum, Katharina

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The three-year evolution of Germany’s Digital Therapeutics reimbursement program and its path forward von Schmidt, Linea, Pawlitzki, Marc, Renard, Bernhard Y., Meuth, Sven G., Masanneck, Lars

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Life Cycle Stage-resolved Proteomic Analysis of the Excretome/Secretome from Strongyloides ratti—Identification of Stage-specific Proteases von Soblik, Hanns, Younis, Abuelhassan Elshazly, Mitreva, Makedonka, Renard, Bernhard Y., Kirchner, Marc, Geisinger, Frank, Steen, Hanno, Brattig, Norbert W.

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RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data von Tausch, Simon H, Renard, Bernhard Y, Nitsche, Andreas, Dabrowski, Piotr Wojciech

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ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing von Ulrich, Jens-Uwe, Lutfi, Ahmad, Rutzen, Kilian, Renard, Bernhard Y

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Silent Witness: Dual-Species Transcriptomics Reveals Epithelial Immunological Quiescence to Helminth Larval Encounter and Fostered Larval Development von Ebner, Friederike, Kuhring, Mathias, Radonić, Aleksandar, Midha, Ankur, Renard, Bernhard Y, Hartmann, Susanne

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Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis von Hanselmann, Michael, Kirchner, Marc, Renard, Bernhard Y, Amstalden, Erika R, Glunde, Kristine, Heeren, Ron M. A, Hamprecht, Fred A

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