Epigenetic priming restores the HLA class-I antigen processing machinery expression in Merkel cell carcinoma von Ritter, Cathrin, Fan, Kaiji, Paschen, Annette, Reker Hardrup, Sine, Ferrone, Soldano, Nghiem, Paul, Ugurel, Selma, Schrama, David, Becker, Jürgen C.

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CD8+ T cells from patients with narcolepsy and healthy controls recognize hypocretin neuron-specific antigens von Pedersen, Natasja Wulff, Holm, Anja, Kristensen, Nikolaj Pagh, Bjerregaard, Anne-Mette, Bentzen, Amalie Kai, Marquard, Andrea Marion, Tamhane, Tripti, Burgdorf, Kristoffer Sølvsten, Ullum, Henrik, Jennum, Poul, Knudsen, Stine, Hadrup, Sine Reker, Kornum, Birgitte Rahbek

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Neoantigen-specific CD8 T cell responses in the peripheral blood following PD-L1 blockade might predict therapy outcome in metastatic urothelial carcinoma von Holm, Jeppe Sejerø, Funt, Samuel A., Borch, Annie, Munk, Kamilla Kjærgaard, Bjerregaard, Anne-Mette, Reading, James L., Maher, Colleen, Regazzi, Ashley, Wong, Phillip, Al-Ahmadie, Hikmat, Iyer, Gopa, Tamhane, Tripti, Bentzen, Amalie Kai, Herschend, Nana Overgaard, De Wolf, Susan, Snyder, Alexandra, Merghoub, Taha, Wolchok, Jedd D., Nielsen, Morten, Rosenberg, Jonathan E., Bajorin, Dean F., Hadrup, Sine Reker

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MuPeXI: prediction of neo-epitopes from tumor sequencing data von Bjerregaard, Anne-Mette, Nielsen, Morten, Hadrup, Sine Reker, Szallasi, Zoltan, Eklund, Aron Charles

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Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers von Saini, Sunil Kumar, Ørskov, Andreas Due, Bjerregaard, Anne-Mette, Unnikrishnan, Ashwin, Holmberg-Thydén, Staffan, Borch, Annie, Jensen, Kathrine Valentini, Anande, Govardhan, Bentzen, Amalie Kai, Marquard, Andrea Marion, Tamhane, Tripti, Treppendahl, Marianne Bach, Gang, Anne Ortved, Dufva, Inge Høgh, Szallasi, Zoltan, Ternette, Nicola, Pedersen, Anders Gorm, Eklund, Aron Charles, Pimanda, John, Grønbæk, Kirsten, Hadrup, Sine Reker

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Neoantigen-reactive CD8+ T cells affect clinical outcome of adoptive cell therapy with tumor-infiltrating lymphocytes in melanoma von Kristensen, Nikolaj Pagh, Heeke, Christina, Tvingsholm, Siri A, Borch, Annie, Draghi, Arianna, Crowther, Michael D, Carri, Ibel, Munk, Kamilla K, Holm, Jeppe Sejerø, Bjerregaard, Anne-Mette, Bentzen, Amalie Kai, Marquard, Andrea M, Szallasi, Zoltan, McGranahan, Nicholas, Andersen, Rikke, Nielsen, Morten, Jönsson, Göran B, Donia, Marco, Svane, Inge Marie, Hadrup, Sine Reker

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Improved T cell receptor antigen pairing through data-driven filtering of sequencing information from single cells von Povlsen, Helle Rus, Bentzen, Amalie Kai, Kadivar, Mohammad, Jessen, Leon Eyrich, Hadrup, Sine Reker, Nielsen, Morten

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T Cell Epitope Prediction and Its Application to Immunotherapy von Schaap-Johansen, Anna-Lisa, Vujović, Milena, Borch, Annie, Hadrup, Sine Reker, Marcatili, Paolo

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An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes von Bjerregaard, Anne-Mette, Nielsen, Morten, Jurtz, Vanessa, Barra, Carolina M, Hadrup, Sine Reker, Szallasi, Zoltan, Eklund, Aron Charles

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Thinking Outside the Gate: Single-Cell Assessments in Multiple Dimensions von Kvistborg, Pia, Gouttefangeas, Cécile, Aghaeepour, Nima, Cazaly, Angelica, Chattopadhyay, Pratip K., Chan, Cliburn, Eckl, Judith, Finak, Greg, Hadrup, Sine Reker, Maecker, Holden T., Maurer, Dominik, Mosmann, Tim, Qiu, Peng, Scheuermann, Richard H., Welters, Marij J.P., Ferrari, Guido, Brinkman, Ryan R., Britten, Cedrik M.

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Parallel detection of antigen-specific T-cell responses by multidimensional encoding of MHC multimers von Schumacher, Ton N, Hadrup, Sine Reker, Bakker, Arnold H, Shu, Chengyi J, Andersen, Rikke S, van Veluw, Jerre, Hombrink, Pleun, Castermans, Emilie, thor Straten, Per, Blank, Christian, Haanen, John B, Heemskerk, Mirjam H

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PD-1 + Polyfunctional T Cells Dominate the Periphery after Tumor-Infiltrating Lymphocyte Therapy for Cancer von Donia, Marco, Kjeldsen, Julie Westerlin, Andersen, Rikke, Westergaard, Marie Christine Wulff, Bianchi, Valentina, Legut, Mateusz, Attaf, Meriem, Szomolay, Barbara, Ott, Sascha, Dolton, Garry, Lyngaa, Rikke, Hadrup, Sine Reker, Sewell, Andrew K, Svane, Inge Marie

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Engineered E. coli Nissle 1917 for delivery of bioactive IL-2 for cancer immunotherapy von Tumas, Sarunas, Meldgaard, Trine Sundebo, Vaaben, Troels Holger, Suarez Hernandez, Sara, Rasmussen, Annemette Tengstedt, Vazquez-Uribe, Ruben, Hadrup, Sine Reker, Sommer, Morten O. A.

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Prediction of neoepitopes from murine sequencing data von Bjerregaard, Anne-Mette, Pedersen, Thomas Kainamura, Marquard, Andrea Marion, Hadrup, Sine Reker

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A modular protein language modelling approach to immunogenicity prediction von O'Brien, Hugh, Salm, Max, Morton, Laura T, Szukszto, Maciej, O'Farrell, Felix, Boulton, Charlotte, King, Laurence, Bola, Supreet Kaur, Becker, Pablo D, Craig, Andrew, Nielsen, Morten, Samuels, Yardena, Swanton, Charles, Mansour, Marc R, Hadrup, Sine Reker, Quezada, Sergio A

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Epigenetic therapy in combination with a multi-epitope cancer vaccine targeting shared tumor antigens for high-risk myelodysplastic syndrome - a phase I clinical trial von Holmberg-Thydén, Staffan, Dufva, Inge Høgh, Gang, Anne Ortved, Breinholt, Marie Fredslund, Schejbel, Lone, Andersen, Mette Klarskov, Kadivar, Mohammad, Svane, Inge Marie, Grønbæk, Kirsten, Hadrup, Sine Reker, El Fassi, Daniel

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Common phenotypic dynamics of tumor-infiltrating lymphocytes across different histologies upon checkpoint inhibition: impact on clinical outcome von Araujo B. de Lima, Vinicius, Borch, Annie, Hansen, Morten, Draghi, Arianna, Spanggaard, Iben, Rohrberg, Kristoffer, Reker Hadrup, Sine, Lassen, Ulrik, Svane, Inge Marie

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Parallel detection of antigen-specific T cell responses by combinatorial encoding of MHC multimers von Andersen, Rikke Sick, Kvistborg, Pia, Frøsig, Thomas Mørch, Pedersen, Natasja W, Lyngaa, Rikke, Bakker, Arnold H, Shu, Chengyi Jenny, Straten, Per thor, Schumacher, Ton N, Hadrup, Sine Reker

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Three doses of BNT162b2 COVID-19 mRNA vaccine establish long-lasting CD8 + T cell immunity in CLL and MDS patients von Hernandez, Susana Patricia Amaya, Hersby, Ditte Stampe, Munk, Kamilla Kjærgaard, Tamhane, Tripti, Trubach, Darya, Tagliamonte, Maria, Buonaguro, Luigi, Gang, Anne Ortved, Hadrup, Sine Reker, Saini, Sunil Kumar

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Immune Mechanisms in Myelodysplastic Syndrome von Glenthøj, Andreas, Ørskov, Andreas Due, Hansen, Jakob Werner, Hadrup, Sine Reker, O'Connell, Casey, Grønbæk, Kirsten

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