Assessing computational tools for the discovery of transcription factor binding sites von Eskin, Eleazar, Ye, Chun, Mironov, Andrei A, Fu, Yutao, Favorov, Alexander V, Pavesi, Giulio, Li, Nan, Pesole, Graziano, Vandenbogaert, Mathias, Noble, William Stafford, Weng, Zhiping, Régnier, Mireille, Sinha, Saurabh, Makeev, Vsevolod J, Kent, W James, De Moor, Bart, Simonis, Nicolas, Zhu, Zhou, Thijs, Gert, Bailey, Timothy L, Frith, Martin C, Workman, Christopher, Church, George M, Tompa, Martin, van Helden, Jacques

Volltext

IPANEMAP: integrative probing analysis of nucleic acids empowered by multiple accessibility profiles von Saaidi, Afaf, Allouche, Delphine, Regnier, Mireille, Sargueil, Bruno, Ponty, Yann

Volltext

SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability von Iakovishina, Daria, Janoueix-Lerosey, Isabelle, Barillot, Emmanuel, Regnier, Mireille, Boeva, Valentina

Volltext

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules von Boeva, Valentina, Clément, Julien, Régnier, Mireille, Roytberg, Mikhail A, Makeev, Vsevolod J

Volltext

Accurate Prediction of the Statistics of Repetitions in Random Sequences: A Case Study in Archaea Genomes von Régnier, Mireille, Chassignet, Philippe

Volltext

Large deviation properties for patterns von Bourdon, Jérémie, Régnier, Mireille

Volltext

Counting RNA pseudoknotted structures von Saule, Cédric, Régnier, Mireille, Steyaert, Jean-Marc, Denise, Alain

Volltext

Analysis of pattern overlaps and exact computation of P-values of pattern occurrences numbers: case of Hidden Markov Models von Régnier, Mireille, Furletova, Evgenia, Yakovlev, Victor, Roytberg, Mikhail

Volltext

SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read map-pability von Iakovishina, Daria, Janoueix-Lerosey, Isabelle, Barillot, Emmanuel, Regnier, Mireille, Boeva, Valentina

Volltext

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression von Boeva, Valentina, Regnier, Mireille, Papatsenko, Dmitri, Makeev, Vsevolod

Volltext

High-throughput sequencing reveals circular substrates for an archaeal RNA ligase von Becker, Hubert F., Héliou, Alice, Djaout, Kamel, Lestini, Roxane, Regnier, Mireille, Myllykallio, Hannu

Volltext

Toxicity of Carbon Dioxide: A Review von Guais, Adeline, Brand, Gerard, Jacquot, Laurence, Karrer, Mélanie, Dukan, Sam, Grévillot, Georges, Molina, Thierry Jo, Bonte, Jacques, Regnier, Mireille, Schwartz, Laurent

Volltext

A unified approach to word occurrence probabilities von Regnier, Mireille

Volltext

Binding of intronic miRNAs to the mRNAs of host genes encoding intronic miRNAs and proteins that participate in tumourigenesis von Berillo, O, Régnier, M, Ivashchenko, A

Volltext

TmiRUSite and TmiROSite scripts: searching for mRNA fragments with miRNA binding sites with encoded amino acid residues von Berillo, Olga, Régnier, Mireille, Ivashchenko, Anatoly

Volltext

Using profiles based on nucleotide hydrophobicity to define essential regions for splicing von Boldina, Galina, Ivashchenko, Anatoly, Régnier, Mireille

Volltext

miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts von Berillo, Olga, Régnier, Mireille, Ivashchenko, Anatoly

Volltext

Automatic RNA secondary structure prediction with a comparative approach von Tahi, Fariza, Gouy, Manolo, Régnier, Mireille

Volltext

Characteristics of binding sites of intergenic, intronic and exonic miRNAs with mRNAs of oncogenes coding intronic miRNAs von Berillo, O A, Issabekova, A S, Regnier, M, Ivashchenko, A T

Volltext

Trie partitioning process: Limiting distributions von Jacquet, Philippe, Regnier, Mireille

Volltext