LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions von Roller, Masa, Stamper, Ericca, Villar, Diego, Izuogu, Osagie, Martin, Fergal, Redmond, Aisling M., Ramachanderan, Raghavendra, Harewood, Louise, Odom, Duncan T., Flicek, Paul

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A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division von Stojic, Lovorka, Lun, Aaron T. L., Mascalchi, Patrice, Ernst, Christina, Redmond, Aisling M., Mangei, Jasmin, Barr, Alexis R., Bousgouni, Vicky, Bakal, Chris, Marioni, John C., Odom, Duncan T., Gergely, Fanni

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Analysis of HER2 genomic binding in breast cancer cells identifies a global role in direct gene regulation von Redmond, Aisling M, Omarjee, Soleilmane, Chernukhin, Igor, Le Romancer, Muriel, Carroll, Jason S

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Coassociation of Estrogen Receptor and p160 Proteins Predicts Resistance to Endocrine Treatment; SRC-1 is an Independent Predictor of Breast Cancer Recurrence von REDMOND, Aisling M, BANE, Fiona T, STAFFORD, Anthony T, MCLLROY, Marie, DILLON, Mary F, CROTTY, Thomas B, HILL, Arnold D, YOUNG, Leonie S

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Pervasive lesion segregation shapes cancer genome evolution von Aitken, Sarah J., Anderson, Craig J., Connor, Frances, Pich, Oriol, Sundaram, Vasavi, Feig, Christine, Rayner, Tim F., Lukk, Margus, Aitken, Stuart, Luft, Juliet, Kentepozidou, Elissavet, Arnedo-Pac, Claudia, Beentjes, Sjoerd V., Davies, Susan E., Drews, Ruben M., Ewing, Ailith, Kaiser, Vera B., Khamseh, Ava, López-Arribillaga, Erika, Redmond, Aisling M., Santoyo-Lopez, Javier, Sentís, Inés, Talmane, Lana, Yates, Andrew D., Semple, Colin A., López-Bigas, Núria, Flicek, Paul, Odom, Duncan T., Taylor, Martin S.

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Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia von Nowicki-Osuch, Karol, Zhuang, Lizhe, Cheung, Tik Shing, Black, Emily L, Masqué-Soler, Neus, Devonshire, Ginny, Redmond, Aisling M, Freeman, Adam, di Pietro, Massimilliano, Pilonis, Nastazja, Januszewicz, Wladyslaw, O'Donovan, Maria, Tavaré, Simon, Shields, Jacqueline D, Fitzgerald, Rebecca C

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Network analysis of SRC-1 reveals a novel transcription factor hub which regulates endocrine resistant breast cancer von Browne, Alacoque L., Charmsaz, Sara, Varešlija, Damir, Fagan, Ailis, Cosgrove, Nicola, Cocchiglia, Sinéad, Purcell, Siobhan, Ward, Elspeth, Bane, Fiona, Hudson, Lance, Hill, Arnold D., Carroll, Jason S., Redmond, Aisling M., Young, Leonie S.

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Comparative analysis of the AIB1 interactome in breast cancer reveals MTA2 as a repressive partner which silences E-Cadherin to promote EMT and associates with a pro-metastatic phe... von Varešlija, Damir, Ward, Elspeth, Purcell, Siobhan P., Cosgrove, Nicola S., Cocchiglia, Sinéad, O’Halloran, Philip J., Charmsaz, Sara, Bane, Fiona T., Brett, Francesca M., Farrell, Michael, Cryan, Jane, Beausang, Alan, Hudson, Lance, Turnbul, Arran K., Dixon, J. Michael, Hill, Arnold D. K., Priedigkeit, Nolan, Oesterreich, Steffi, Lee, Adrian V., Sims, Andrew H., Redmond, Aisling M., Carroll, Jason S., Young, Leonie S.

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Cyclooxygenase-2 predicts adverse effects of tamoxifen: a possible mechanism of role for nuclear HER2 in breast cancer patients von Dillon, Mary F, Stafford, Anthony T, Kelly, Gabrielle, Redmond, Aisling M, McIlroy, Marie, Crotty, Thomas B, McDermott, E, Hill, Arnold D, Young, Leonie S

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Adaptation to AI Therapy in Breast Cancer Can Induce Dynamic Alterations in ER Activity Resulting in Estrogen-Independent Metastatic Tumors von Varešlija, Damir, McBryan, Jean, Fagan, Ailís, Redmond, Aisling M, Hao, Yuan, Sims, Andrew H, Turnbull, Arran, Dixon, J M, Ó Gaora, Peadar, Hudson, Lance, Purcell, Siobhan, Hill, Arnold D K, Young, Leonie S

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Enhancer-derived RNAs: 'spicing up' transcription programs von Redmond, Aisling M, Carroll, Jason S

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Defining and targeting transcription factors in cancer von Redmond, Aisling M, Carroll, Jason S

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Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma von Abbas, Sujath, Pich, Oriol, Devonshire, Ginny, Zamani, Shahriar A., Katz-Summercorn, Annalise, Killcoyne, Sarah, Cheah, Calvin, Nutzinger, Barbara, Grehan, Nicola, Lopez-Bigas, Nuria, Fitzgerald, Rebecca C., Secrier, Maria

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A decade of the Oesophageal Cancer Clinical and Molecular Stratification Consortium von Peters, C. J., Ang, Y., Ciccarelli, F. D., Coles, H., Coleman, H. G., Contino, G., Crosby, T., Devonshire, G., Eldridge, M., Freeman, A., Grehan, N., McCord, M., Nutzinger, B., Zamani, S., Parsons, S. L., Petty, R., Sharrocks, A. D., Skipworth, R. J. E., Smyth, E. C., Soomro, I., Underwood, T. J., Fitzgerald, R. C.

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A decade of the Oesophageal Cancer Clinical and Molecular Stratification Consortium von Peters, C. j, Ang, Y, Ciccarelli, F. d, Coles, H, Coleman, H. g, Contino, G, Crosby, T, Devonshire, G, Eldridge, M, Freeman, A, Grehan, N, Mccord, M, Nutzinger, B, Zamani, S, Parsons, S. l, Petty, R, Sharrocks, Andrew, Skipworth, R. j. e, Smyth, E. c, Soomro, I, Underwood, T. j, Edwards, Paul a. w, Redmond, Aisling m, Loreno, Christine, Abbas, Sujath, O’donovan, Maria, Miremadi, Ahmad, Malhotra, Shalini, Tripathi, Monika, Cheah, Calvin, Millington, Curtis, Secrier, Maria, Jammula, Sriganesh, Davies, Jim, Crichton, Charles, Carroll, Nick, Hardwick, Richard h, Safranek, Peter, Hindmarsh, Andrew, Sujendran, Vijayendran, Hayes, Stephen, Preston, Shaun r, Bagwan, Izhar, Save, Vicki, Hupp, Ted r, O’neill, J. robert, Tucker, Olga, Beggs, Andrew, Taniere, Philippe, Puig, Sonia, Walker, Robert c, Grace, Ben l, Lagergren, Jesper, Gossage, James a, Davies, Andrew r, Chang, Fuju, Mahadeva, Ula, Goh, Vicky, Sanders, Grant, Berrisford, Richard, Chan, David, Cheong, Ed, Kumar, Bhaskar, Sreedharan, L, Kaye, Philip, Saunders, John h, Lovat, Laurence, Haidry, Rehan, Scott, Michael, Sothi, Sharmila, Lishman, Suzy, Hanna, George b, Moorthy, Krishna, Grabowska, Anna, Turkington, Richard c, Mcmanus, Damian, Bartlett, Freddie, Fitzgerald, R. c

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Disentangling oncogenic amplicons in esophageal adenocarcinoma von Ng, Alvin Wei Tian, McClurg, Dylan Peter, Wesley, Ben, Zamani, Shahriar A., Black, Emily, Miremadi, Ahmad, Giger, Olivier, Hoopen, Rogier ten, Devonshire, Ginny, Redmond, Aisling M., Grehan, Nicola, Jammula, Sriganesh, Blasko, Adrienn, Li, Xiaodun, Aparicio, Samuel, Tavaré, Simon, Nowicki-Osuch, Karol, Fitzgerald, Rebecca C.

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Author Correction: Disentangling oncogenic amplicons in esophageal adenocarcinoma von Ng, Alvin Wei Tian, McClurg, Dylan Peter, Wesley, Ben, Zamani, Shahriar A., Black, Emily, Miremadi, Ahmad, Giger, Olivier, Hoopen, Rogier ten, Devonshire, Ginny, Redmond, Aisling M., Grehan, Nicola, Jammula, Sriganesh, Blasko, Adrienn, Li, Xiaodun, Aparicio, Samuel, Tavaré, Simon, Nowicki-Osuch, Karol, Fitzgerald, Rebecca C.

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Multicentre validation of CT grey-level co-occurrence matrix features for overall survival in primary oesophageal adenocarcinoma von O’Shea, Robert, Withey, Samuel J., Owczarczyk, Kasia, Rookyard, Christopher, Gossage, James, Godfrey, Edmund, Jobling, Craig, Parsons, Simon L., Skipworth, Richard J. E., Goh, Vicky

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Multi-Omic Analysis of Esophageal Adenocarcinoma Uncovers Candidate Therapeutic Targets and Cancer-Selective Posttranscriptional Regulation von O'Neill, J. Robert, Yébenes Mayordomo, Marcos, Mitulović, Goran, Al Shboul, Sofian, Bedran, Georges, Faktor, Jakub, Hernychova, Lenka, Uhrik, Lukas, Gómez-Herranz, Maria, Kocikowski, Mikołaj, Save, Vicki, Vojtěšek, Bořivoj, Arends, Mark J., Fitzgerald, Rebecca C., Edwards, Paul A.W., Grehan, Nicola, Nutzinger, Barbara, Loreno, Christine, Redmond, Aisling M., Abbas, Sujath, Freeman, Adam, Smyth, Elizabeth C., O'Donovan, Maria, Miremadi, Ahmad, Malhotra, Shalini, Tripathi, Monika, Cheah, Calvin, Coles, Hannah, Millington, Curtis, Devonshire, Ginny, Eldridge, Matthew, Secrier, Maria, Jammula, Sriganesh, Davies, Jim, Crichton, Charles, Carroll, Nick, Hardwick, Richard H., Safranek, Peter, Hindmarsh, Andrew, Sujendran, Vijayendran, Hayes, Stephen J., Ang, Yeng, Sharrocks, Andrew, Preston, Shaun R., Bagwan, Izhar, Save, Vicki, Skipworth, Richard J.E., Hupp, Ted R., O'Neill, J Robert, Tucker, Olga, Beggs, Andrew, Taniere, Philippe, Puig, Sonia, Contino, Gianmarco, Underwood, Timothy J., Walker, Robert C., Grace, Ben L., Lagergren, Jesper, Gossage, James, Davies, Andrew, Chang, Fuju, Mahadeva, Ula, Goh, Vicky, Ciccarelli, Francesca D., Sanders, Grant, Berrisford, Richard, Chan, David, Cheong, Ed, Kumar, Bhaskar, Sreedharan, L., Parsons, Simon L., Soomro, Irshad, Kaye, Philip, Saunders, John, Lovat, Laurence, Haidry, Rehan, Scott, Michael, Sothi, Sharmila, Lishman, Suzy, Hanna, George B., Peters, Christopher J., Moorthy, Krishna, Grabowska, Anna, Turkington, Richard, McManus, Damian, Coleman, Helen, Petty, Russell D., Bartlet, Freddie, Hupp, Ted, Alfaro, Javier Antonio

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Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas von Ng, Alvin Wei Tian, Contino, Gianmarco, Killcoyne, Sarah, Devonshire, Ginny, Hsu, Ray, Abbas, Sujath, Su, Jing, Redmond, Aisling M., Weaver, Jamie M. J., Eldridge, Matthew D., Tavaré, Simon, Edwards, Paul A. W., Fitzgerald, Rebecca C.

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