Snakemake—a scalable bioinformatics workflow engine von KÖSTER, Johannes, RAHMANN, Sven

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Sustainable data analysis with Snakemake [version 2; peer review: 2 approved] von Mölder, Felix, Jablonski, Kim Philipp, Letcher, Brice, Hall, Michael B, Tomkins-Tinch, Christopher H, Sochat, Vanessa, Forster, Jan, Lee, Soohyun, Twardziok, Sven O, Kanitz, Alexander, Wilm, Andreas, Holtgrewe, Manuel, Rahmann, Sven, Nahnsen, Sven, Köster, Johannes

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N6-adenosine methylation in MiRNAs von Berulava, Tea, Rahmann, Sven, Rademacher, Katrin, Klein-Hitpass, Ludgar, Horsthemke, Bernhard

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SimLoRD: Simulation of Long Read Data von Stöcker, Bianca K, Köster, Johannes, Rahmann, Sven

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Fast lightweight accurate xenograft sorting von Zentgraf, Jens, Rahmann, Sven

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Epitope similarity cannot explain the pre-formed T cell immunity towards structural SARS-CoV-2 proteins von Stervbo, Ulrik, Rahmann, Sven, Roch, Toralf, Westhoff, Timm H., Babel, Nina

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Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics von Graupner, Nadine, Jensen, Manfred, Bock, Christina, Marks, Sabina, Rahmann, Sven, Beisser, Daniela, Boenigk, Jens

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wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data von Woeste, Marius, Leitao, Elsa, Laurentino, Sandra, Horsthemke, Bernhard, Rahmann, Sven, Schroeder, Christopher

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CDKN2A deletion in supratentorial ependymoma with RELA alteration indicates a dismal prognosis: a retrospective analysis of the HIT ependymoma trial cohort von Jünger, Stephanie T., Andreiuolo, Felipe, Mynarek, Martin, Wohlers, Inken, Rahmann, Sven, Klein-Hitpass, Ludger, Dörner, Evelyn, zur Mühlen, Anja, Velez-Char, Natalia, von Hoff, Katja, Warmuth-Metz, Monika, Kortmann, Rolf-Dieter, Timmermann, Beate, von Bueren, Andre, Rutkowski, Stefan, Pietsch, Torsten

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Efficient exact motif discovery von Marschall, Tobias, Rahmann, Sven

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A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification von Schröder, Christopher, Rahmann, Sven

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Three-Year Mortality of Older Hospitalized Patients with Osteosarcopenia: Data from the OsteoSys Study von Pourhassan, Maryam, Buehring, Bjoern, Stervbo, Ulrik, Rahmann, Sven, Mölder, Felix, Rütten, Sebastian, Neuendorff, Nina Rosa, Westhoff, Timm Henning, Babel, Nina, Wirth, Rainer

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Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure von Boenigk, Jens, Beisser, Daniela, Zimmermann, Sonja, Bock, Christina, Jakobi, Jurij, Grabner, Daniel, Groβmann, Lars, Rahmann, Sven, Barcikowski, Stephan, Sures, Bernd

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TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms von Beisser, Daniela, Graupner, Nadine, Grossmann, Lars, Timm, Henning, Boenigk, Jens, Rahmann, Sven

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Meiotic recombination in the offspring of Microbotryum hybrids and its impact on pathogenicity von Bueker, Britta, Guerreiro, Marco Alexandre, Hood, Michael E., Brachmann, Andreas, Rahmann, Sven, Begerow, Dominik

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Snakemake—a scalable bioinformatics workflow engine von Köster, Johannes, Rahmann, Sven

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Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing von Tüns, Alicia Isabell, Hartmann, Till, Magin, Simon, González, Rocío Chamorro, Henssen, Anton George, Rahmann, Sven, Schramm, Alexander, Köster, Johannes

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A detailed comparison of analysis processes for MCC-IMS data in disease classification-Automated methods can replace manual peak annotations von Horsch, Salome, Kopczynski, Dominik, Kuthe, Elias, Baumbach, Jörg Ingo, Rahmann, Sven, Rahnenführer, Jörg

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Osteosarcopenia, an Asymmetrical Overlap of Two Connected Syndromes: Data from the OsteoSys Study von Pourhassan, Maryam, Buehring, Bjoern, Stervbo, Ulrik, Rahmann, Sven, Moelder, Felix, Ruetten, Sebastian, Trampisch, Ulrike, Babel, Nina, Westhoff, Timm Henning, Wirth, Rainer

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The Role of Pre-existing Cross-Reactive Central Memory CD4 T-Cells in Vaccination With Previously Unseen Influenza Strains von Nienen, Mikalai, Stervbo, Ulrik, Mölder, Felix, Kaliszczyk, Sviatlana, Kuchenbecker, Leon, Gayova, Ludmila, Schweiger, Brunhilde, Jürchott, Karsten, Hecht, Jochen, Neumann, Avidan U, Rahmann, Sven, Westhoff, Timm, Reinke, Petra, Thiel, Andreas, Babel, Nina

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