The Encyclopedia of DNA elements (ENCODE): data portal update von Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael

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New developments on the Encyclopedia of DNA Elements (ENCODE) data portal von Luo, Yunhai, Hitz, Benjamin C, Gabdank, Idan, Hilton, Jason A, Kagda, Meenakshi S, Lam, Bonita, Myers, Zachary, Sud, Paul, Jou, Jennifer, Lin, Khine, Baymuradov, Ulugbek K, Graham, Keenan, Litton, Casey, Miyasato, Stuart R, Strattan, J Seth, Jolanki, Otto, Lee, Jin-Wook, Tanaka, Forrest Y, Adenekan, Philip, O’Neill, Emma, Cherry, J Michael

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The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data von Skrzypek, Marek S, Binkley, Jonathan, Binkley, Gail, Miyasato, Stuart R, Simison, Matt, Sherlock, Gavin

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The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community von Arnaud, Martha B, Chibucos, Marcus C, Costanzo, Maria C, Crabtree, Jonathan, Inglis, Diane O, Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S, Binkley, Gail, Miyasato, Stuart R, Wortman, Jennifer R, Sherlock, Gavin

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Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources von Wong, Edith D, Miyasato, Stuart R, Aleksander, Suzi, Karra, Kalpana, Nash, Robert S, Skrzypek, Marek S, Weng, Shuai, Engel, Stacia R, Cherry, J Michael

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New tools at the Candida Genome Database: biochemical pathways and full-text literature search von Skrzypek, Marek S, Arnaud, Martha B, Costanzo, Maria C, Inglis, Diane O, Shah, Prachi, Binkley, Gail, Miyasato, Stuart R, Sherlock, Gavin

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations von Cerqueira, Gustavo C, Arnaud, Martha B, Inglis, Diane O, Skrzypek, Marek S, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R

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New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources von Engel, Stacia R, Wong, Edith D, Nash, Robert S, Aleksander, Suzi, Alexander, Micheal, Douglass, Eric, Karra, Kalpana, Miyasato, Stuart R, Simison, Matt, Skrzypek, Marek S, Weng, Shuai, Cherry, J Michael

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The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida... von Inglis, Diane O., Arnaud, Martha B., Binkley, Jonathan, Shah, Prachi, Skrzypek, Marek S., Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin

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The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now von Engel, Stacia R, Dietrich, Fred S, Fisk, Dianna G, Binkley, Gail, Balakrishnan, Rama, Costanzo, Maria C, Dwight, Selina S, Hitz, Benjamin C, Karra, Kalpana, Nash, Robert S, Weng, Shuai, Wong, Edith D, Lloyd, Paul, Skrzypek, Marek S, Miyasato, Stuart R, Simison, Matt, Cherry, J Michael

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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources von Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.

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Saccharomyces genome database informs human biology von Skrzypek, Marek S, Nash, Robert S, Wong, Edith D, MacPherson, Kevin A, Hellerstedt, Sage T, Engel, Stacia R, Karra, Kalpana, Weng, Shuai, Sheppard, Travis K, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Cherry, J Michael

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The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny von Binkley, Jonathan, Arnaud, Martha B, Inglis, Diane O, Skrzypek, Marek S, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R, Simison, Matt, Sherlock, Gavin

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Saccharomyces Genome Database provides mutant phenotype data von Engel, Stacia R, Balakrishnan, Rama, Binkley, Gail, Christie, Karen R, Costanzo, Maria C, Dwight, Selina S, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Hong, Eurie L, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Dolinski, Kara, Botstein, David, Cherry, J. Michael

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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata von Hitz, Benjamin C, Rowe, Laurence D, Podduturi, Nikhil R, Glick, David I, Baymuradov, Ulugbek K, Malladi, Venkat S, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Narayana, Aditi K, Onate, Kathrina C, Hilton, Jason, Ho, Marcus C, Lee, Brian T, Miyasato, Stuart R, Dreszer, Timothy R, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest Y, Hong, Eurie L, Cherry, J Michael

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The ENCODE Portal as an Epigenomics Resource von Jou, Jennifer, Gabdank, Idan, Luo, Yunhai, Lin, Khine, Sud, Paul, Myers, Zachary, Hilton, Jason A., Kagda, Meenakshi S., Lam, Bonita, O'Neill, Emma, Adenekan, Philip, Graham, Keenan, Baymuradov, Ulugbek K., R. Miyasato, Stuart, Strattan, J. Seth, Jolanki, Otto, Lee, Jin‐Wook, Litton, Casey, Y. Tanaka, Forrest, Hitz, Benjamin C., Cherry, J. Michael

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The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information von Arnaud, Martha B., Costanzo, Maria C., Skrzypek, Marek S., Binkley, Gail, Lane, Christopher, Miyasato, Stuart R., Sherlock, Gavin

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Sequence resources at the Candida Genome Database von Arnaud, Martha B, Costanzo, Maria C, Skrzypek, Marek S, Shah, Prachi, Binkley, Gail, Lane, Christopher, Miyasato, Stuart R, Sherlock, Gavin

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Sequence resources at the Candida Genome Database von Arnaud, Martha B, Costanzo, Maria C, Skrzypek, Marek S, Shah, Prachi, Binkley, Gail, Lane, Christopher, Miyasato, Stuart R, Sherlock, Gavin

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Prevention of data duplication for high throughput sequencing repositories von Gabdank, Idan, Chan, Esther T, Davidson, Jean M, Hilton, Jason A, Davis, Carrie A, Baymuradov, Ulugbek K, Narayanan, Aditi, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Hitz, Benjamin C, Sloan, Cricket A, Cherry, J Michael

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