GOA database in 2009--an integrated Gene Ontology Annotation resource von Barrell, Daniel, Dimmer, Emily, Huntley, Rachael P, Binns, David, O'Donovan, Claire, Apweiler, Rolf

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InterProScan: protein domains identifier von Quevillon, E., Silventoinen, V., Pillai, S., Harte, N., Mulder, N., Apweiler, R., Lopez, R.

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IntAct--open source resource for molecular interaction data von Kerrien, S, Alam-Faruque, Y, Aranda, B, Bancarz, I, Bridge, A, Derow, C, Dimmer, E, Feuermann, M, Friedrichsen, A, Huntley, R, Kohler, C, Khadake, J, Leroy, C, Liban, A, Lieftink, C, Montecchi-Palazzi, L, Orchard, S, Risse, J, Robbe, K, Roechert, B, Thorneycroft, D, Zhang, Y, Apweiler, R, Hermjakob, H

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InterProScan – an integration platform for the signature-recognition methods in InterPro von Zdobnov, Evgeni M., Apweiler, Rolf

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On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database von Apweiler, Rolf, Hermjakob, Henning, Sharon, Nathan

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UniProt: the Universal Protein knowledgebase von Apweiler, Rolf, Bairoch, Amos, Wu, Cathy H., Barker, Winona C., Boeckmann, Brigitte, Ferro, Serenella, Gasteiger, Elisabeth, Huang, Hongzhan, Lopez, Rodrigo, Magrane, Michele, Martin, Maria J., Natale, Darren A., O’Donovan, Claire, Redaschi, Nicole, Yeh, Lai‐Su L.

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The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 von Bairoch, Amos, Apweiler, Rolf

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The InterPro database, an integrated documentation resource for protein families, domains and functional sites von Apweiler, R, Attwood, T K, Bairoch, A, Bateman, A, Birney, E, Biswas, M, Bucher, P, Cerutti, L, Corpet, F, Croning, M D, Durbin, R, Falquet, L, Fleischmann, W, Gouzy, J, Hermjakob, H, Hulo, N, Jonassen, I, Kahn, D, Kanapin, A, Karavidopoulou, Y, Lopez, R, Marx, B, Mulder, N J, Oinn, T M, Pagni, M, Servant, F, Sigrist, C J, Zdobnov, E M

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The SWISS-PROT protein sequence data bank and its supplement TrEMBL von Bairoch, Amos, Apweiler, Rolf

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Ontology Lookup Service: more data and better tools for controlled vocabulary queries von Côté, Richard G, Jones, Philip, Martens, Lennart, Apweiler, Rolf, Hermjakob, Henning

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E-MSD: an integrated data resource for bioinformatics von Velankar, S., McNeil, P., Mittard-Runte, V., Suarez, A., Barrell, D., Apweiler, R., Henrick, K.

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SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 von Bairoch, A, Apweiler, R

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InterPro—an integrated documentation resource for protein families, domains and functional sites von Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M. D. R., Durbin, R., Falquet, L., Fleischmann, W., Gouzy, J., Hermjakob, H., Hulo, N., Jonassen, I., Kahn, D., Kanapin, A., Karavidopoulou, Y., Lopez, R., Marx, B., Mulder, N. J., Oinn, T. M., Pagni, M., Servant, F., Sigrist, C. J. A., Zdobnov, E. M.

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Functional information in SWISS-PROT: the basis for large-scale characterisation of protein sequences von Apweiler, R

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The cardiovascular gene annotation initiative: current and future aims von Lovering, R.C, Campbell, N.H, Melidoni, A.N, Rodriguez-Lopez, M, Huntley, R.P, Sawford, T, O’Donovan, C, Martin, M, Orchard, S, Hermjakob, H, Mayr, M, Apweiler, R, Humphries, S.E, Talmud, P.J

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Filtering erroneous protein annotation von Wieser, D., Kretschmann, E., Apweiler, R.

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A comparison of signal sequence prediction methods using a test set of signal peptides von Menne, Kerstin M.L., Hermjakob, Henning, Apweiler, Rolf

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CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins von Kriventseva, E V, Fleischmann, W, Zdobnov, E M, Apweiler, R

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Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes von Apweiler, R, Biswas, M, Fleischmann, W, Kanapin, A, Karavidopoulou, Y, Kersey, P, Kriventseva, E V, Mittard, V, Mulder, N, Phan, I, Zdobnov, E

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A collection of well characterised integral membrane proteins von Möller, Steffen, Kriventseva, Evgenia V., Apweiler, Rolf

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