Long-timescale simulation methods von Elber, Ron

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A Milestoning Study of the Kinetics of an Allosteric Transition: Atomically Detailed Simulations of Deoxy Scapharca Hemoglobin von Elber, Ron

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Enhanced sampling in molecular dynamics: use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin von Elber, R, Karplus, M

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Computing time scales from reaction coordinates by milestoning von Faradjian, Anton K, Elber, Ron

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Multiple Conformational States of Proteins: A Molecular Dynamics Analysis of Myoglobin von Elber, R., Karplus, M.

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SHAKE parallelization von Elber, R., Ruymgaart, A. P., Hess, B.

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A method for determining reaction paths in large molecules: Application to myoglobin von Elber, R., Karplus, M.

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Molecular kinetics in condensed phases: theory, simulation, and analysis von Elber, Ron, Makarov, Dmitrii E, Orland, Henri

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Revisiting and parallelizing SHAKE von Weinbach, Yael, Elber, Ron

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SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs von Qiu, Jian, Elber, Ron

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Distance-dependent, pair potential for protein folding: Results from linear optimization von Tobi, Dror, Elber, Ron

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fw2.2: A Quantitative Trait Locus Key to the Evolution of Tomato Fruit Size von Frary, Anne, Nesbitt, T. Clint, Frary, Amy, Grandillo, Silvana, van der Knaap, Esther, Cong, Bin, Liu, Jiping, Meller, Jaroslaw, Elber, Ron, Alpert, Kevin B., Tanksley, Steven D.

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Linear programming optimization and a double statistical filter for protein threading protocols von Meller, Jaroslaw, Elber, Ron

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Vibrational Spectroscopy of Peptides and Peptide−Water Complexes:  Anharmonic Coupled-Mode Calculations von Gregurick, S. K, Fredj, E, Elber, R, Gerber, R. B

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Atomically detailed potentials to recognize native and approximate protein structures von Qiu, Jian, Elber, Ron

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Enriching the sequence substitution matrix by structural information von Teodorescu, Octavian, Galor, Tamara, Pillardy, Jaroslaw, Elber, Ron

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An Atomically Detailed Study of the Folding Pathways of Protein A with the Stochastic Difference Equation von Ghosh, Avijit, Elber, Ron, Scheraga, Harold A.

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Molecular dynamics simulation of NO recombination to myoglobin mutants von Li, H., Elber, R., Straub, J.E.

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Distal pocket residues affect picosecond ligand recombination in myoglobin. An experimental and molecular dynamics study of position 29 mutants von GIBSON, Q. H, REGAN, R, ELBER, R, OLSON, J. S, CARVER, T. E

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The dominant interaction between peptide and urea is electrostatic in nature: A molecular dynamics simulation study von Tobi, Dror, Elber, Ron, Thirumalai, Devarajan

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