Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R von McCarthy, Davis J, Campbell, Kieran R, Lun, Aaron T L, Wills, Quin F

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Application of single-cell genomics in cancer: promise and challenges von Wills, Quin F, Mead, Adam J

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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease von Kinchen, James, Chen, Hannah H., Parikh, Kaushal, Antanaviciute, Agne, Jagielowicz, Marta, Fawkner-Corbett, David, Ashley, Neil, Cubitt, Laura, Mellado-Gomez, Esther, Attar, Moustafa, Sharma, Eshita, Wills, Quin, Bowden, Rory, Richter, Felix C., Ahern, David, Puri, Kamal D., Henault, Jill, Gervais, Francois, Koohy, Hashem, Simmons, Alison

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Beta-Poisson model for single-cell RNA-seq data analyses von Vu, Trung Nghia, Wills, Quin F, Kalari, Krishna R, Niu, Nifang, Wang, Liewei, Rantalainen, Mattias, Pawitan, Yudi

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Methods for qPCR gene expression profiling applied to 1440 lymphoblastoid single cells von Livak, Kenneth J., Wills, Quin F., Tipping, Alex J., Datta, Krishnalekha, Mittal, Rowena, Goldson, Andrew J., Sexton, Darren W., Holmes, Chris C.

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Isoform-level gene expression patterns in single-cell RNA-sequencing data von Vu, Trung Nghia, Wills, Quin F, Kalari, Krishna R, Niu, Nifang, Wang, Liewei, Pawitan, Yudi, Rantalainen, Mattias

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MicroRNA-125a is over-expressed in insulin target tissues in a spontaneous rat model of Type 2 Diabetes von Herrera, Blanca M, Lockstone, Helen E, Taylor, Jennifer M, Wills, Quin F, Kaisaki, Pamela J, Barrett, Amy, Camps, Carme, Fernandez, Christina, Ragoussis, Jiannis, Gauguier, Dominique, McCarthy, Mark I, Lindgren, Cecilia M

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Coexpression network analysis in abdominal and gluteal adipose tissue reveals regulatory genetic loci for metabolic syndrome and related phenotypes von Min, Josine L, Nicholson, George, Halgrimsdottir, Ingileif, Almstrup, Kristian, Petri, Andreas, Barrett, Amy, Travers, Mary, Rayner, Nigel W, Mägi, Reedik, Pettersson, Fredrik H, Broxholme, John, Neville, Matt J, Wills, Quin F, Cheeseman, Jane, Allen, Maxine, Holmes, Chris C, Spector, Tim D, Fleckner, Jan, McCarthy, Mark I, Karpe, Fredrik, Lindgren, Cecilia M, Zondervan, Krina T

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MicroRNA expression in abdominal and gluteal adipose tissue is associated with mRNA expression levels and partly genetically driven von Rantalainen, Mattias, Herrera, Blanca M, Nicholson, George, Bowden, Rory, Wills, Quin F, Min, Josine L, Neville, Matt J, Barrett, Amy, Allen, Maxine, Rayner, Nigel W, Fleckner, Jan, McCarthy, Mark I, Zondervan, Krina T, Karpe, Fredrik, Holmes, Chris C, Lindgren, Cecilia M

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A live-cell, high-content imaging survey of 206 endogenous factors across five stress conditions reveals context-dependent survival effects in mouse primary beta cells von Yang, Yu Hsuan Carol, Wills, Quin F., Johnson, James D.

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Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments von Wills, Quin F, Livak, Kenneth J, Tipping, Alex J, Enver, Tariq, Goldson, Andrew J, Sexton, Darren W, Holmes, Chris

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Model-based unsupervised learning informs metformin-induced cell-migration inhibition through an AMPK-independent mechanism in breast cancer von Athreya, Arjun P, Kalari, Krishna R, Cairns, Junmei, Gaglio, Alan J, Wills, Quin F, Niu, Nifang, Weinshilboum, Richard, Iyer, Ravishankar K, Wang, Liewei

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The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq von Wills, Quin F, Mellado-Gomez, Esther, Nolan, Rory, Warner, Damien, Sharma, Eshita, Broxholme, John, Wright, Benjamin, Lockstone, Helen, James, William, Lynch, Mark, Gonzales, Michael, West, Jay, Leyrat, Anne, Padilla-Parra, Sergi, Filippi, Sarah, Holmes, Chris, Moore, Michael D, Bowden, Rory

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Studying epigenomics in single cells: what is feasible and what can we learn? von Wills, Quin F, Higgs, Douglas R, Mead, Adam J

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Statistical approaches and software for clustering islet cell functional heterogeneity von Wills, Quin F., Boothe, Tobias, Asadi, Ali, Ao, Ziliang, Warnock, Garth L., Kieffer, Timothy J., Johnson, James D.

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Development of a 2D nonalcohol-related steatohepatitis (NASH) model von Gonzalez, Esther Arnaiz, Choudhury, Tahmid, Miar, Ana, Moore, Kenny, Lin, Yuan-Yu, Lu, Tess, Wills, Quin

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WED-548 - Development of a 2D nonalcohol-related steatohepatitis (NASH) model von Gonzalez, Esther Arnaiz, Choudhury, Tahmid, Miar, Ana, Moore, Kenny, Lin, Yuan-Yu, Lu, Tess, Wills, Quin

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Unravelling Cell Cycle and Ontogeny Transcriptional Heterogeneity in Hematopoietic Stem Cells through Integrated Single Cell RNA-Seq von Povinelli, Benjamin, Wills, Quin, Barkas, Nikolaos, Booth, Christopher, Campbell, Kieran, Jacobsen, Sten Eirik, Yau, Christopher, Mead, Adam J

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3143 - Integrated Single Cell Analysis Reveals Cell Cycle and Ontogeny Related Transcriptional Heterogeneity in Hscs von Povinelli, Benjamin, Wills, Quin, Barkas, Nikolaos, Booth, Christopher, Campbell, Kieran, Rodriguez-Meira, Alba, Jacobsen, Sten Eirik, Yau, Christopher, Mead, Adam

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Integrated Single Cell Analysis Reveals Cell Cycle and Ontogeny Related Transcriptional Heterogeneity in Hscs von Povinelli, Benjamin, Wills, Quin, Barkas, Nikolaos, Booth, Christopher, Campbell, Kieran, Rodriguez-Meira, Alba, Jacobsen, Sten Eirik, Yau, Christopher, Mead, Adam

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