Twenty years of transposable element analysis in the Arabidopsis thaliana genome von Quesneville, Hadi

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Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila von Rech, Gabriel E., Radío, Santiago, Guirao-Rico, Sara, Aguilera, Laura, Horvath, Vivien, Green, Llewellyn, Lindstadt, Hannah, Jamilloux, Véronique, Quesneville, Hadi, González, Josefa

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Considering transposable element diversification in de novo annotation approaches von Flutre, Timothée, Duprat, Elodie, Feuillet, Catherine, Quesneville, Hadi

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Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana von Maumus, Florian, Quesneville, Hadi

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Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter von Maumus, Florian, Quesneville, Hadi

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PASTEC: an automatic transposable element classification tool von Hoede, Claire, Arnoux, Sandie, Moisset, Mark, Chaumier, Timothée, Inizan, Olivier, Jamilloux, Véronique, Quesneville, Hadi

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A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges von Ben Amara, Wiem, Quesneville, Hadi, Khemakhem, Maha Mezghani

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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data von Alaux, Michael, Rogers, Jane, Letellier, Thomas, Flores, Raphaël, Alfama, Françoise, Pommier, Cyril, Mohellibi, Nacer, Durand, Sophie, Kimmel, Erik, Michotey, Célia, Guerche, Claire, Loaec, Mikaël, Lainé, Mathilde, Steinbach, Delphine, Choulet, Frédéric, Rimbert, Hélène, Leroy, Philippe, Guilhot, Nicolas, Salse, Jérôme, Feuillet, Catherine, Paux, Etienne, Eversole, Kellye, Adam-Blondon, Anne-Françoise, Quesneville, Hadi

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Formation of plant metabolic gene clusters within dynamic chromosomal regions von Field, Ben, Fiston-Lavier, Anna-Sophie, Kemen, Ariane, Geisler, Katrin, Quesneville, Hadi, Osbourn, Anne E

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Reconciling the evolutionary origin of bread wheat (Triticum aestivum) von El Baidouri, Moaine, Murat, Florent, Veyssiere, Maeva, Molinier, Mélanie, Flores, Raphael, Burlot, Laura, Alaux, Michael, Quesneville, Hadi, Pont, Caroline, Salse, Jérôme

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LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss von Vitte, Clémentine, Panaud, Olivier, Quesneville, Hadi

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Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters von Zanni, Vanessa, Eymery, Angéline, Coiffet, Michael, Zytnicki, Matthias, Luyten, Isabelle, Quesneville, Hadi, Vaury, Chantal, Jensen, Silke

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The wheat powdery mildew genome shows the unique evolution of an obligate biotroph von Wicker, Thomas, Oberhaensli, Simone, Parlange, Francis, Buchmann, Jan P, Shatalina, Margarita, Roffler, Stefan, Ben-David, Roi, Doležel, Jaroslav, Šimková, Hana, Schulze-Lefert, Paul, Spanu, Pietro D, Bruggmann, Rémy, Amselem, Joelle, Quesneville, Hadi, Ver Loren van Themaat, Emiel, Paape, Timothy, Shimizu, Kentaro K, Keller, Beat

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S-MART, a software toolbox to aid RNA-Seq data analysis von Zytnicki, Matthias, Quesneville, Hadi

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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution von Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi, Teycheney, Pierre-Yves

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Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening von Jouffroy, Ophélie, Saha, Surya, Mueller, Lukas, Quesneville, Hadi, Maumus, Florian

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Genome-wide studies highlight indirect links between human replication origins and gene regulation von Cadoret, Jean-Charles, Meisch, Françoise, Hassan-Zadeh, Vahideh, Luyten, Isabelle, Guillet, Claire, Duret, Laurent, Quesneville, Hadi, Prioleau, Marie-Noëlle

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The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes von Molitor, Anne M., Latrasse, David, Zytnicki, Matthias, Andrey, Philippe, Houba-Hérin, Nicole, Hachet, Mélanie, Battail, Christophe, Del Prete, Stefania, Alberti, Adriana, Quesneville, Hadi, Gaudin, Valérie

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Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat ( Triticum aestivum L.) von Quraishi, Umar M, Pont, Caroline, Ain, Qurat-Ul, Flores, Raphael, Burlot, Laura, Alaux, Michael, Quesneville, Hadi, Salse, Jerome

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Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS) [version 1; peer review: 2 approved, 1 approved with... von Sen, Taner Z, Caccamo, Mario, Edwards, David, Quesneville, Hadi

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