Discovering and detecting transposable elements in genome sequences von Bergman, Casey M., Quesneville, Hadi

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Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements von d'Alençon, E, Sezutsu, H, Legeai, F, Permal, E, Bernard-Samain, S, Gimenez, S, Gagneur, C, Cousserans, F, Shimomura, M, Brun-Barale, A, Flutre, T, Couloux, A, East, P, Gordon, K, Mita, K, Quesneville, H, Fournier, P, Feyereisen, R

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Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS von Pommier, C, Michotey, C, Cornut, G, Roumet, P, Duchêne, E, Flores, R, Lebreton, A, Alaux, M, Durand, S, Kimmel, E, Letellier, T, Merceron, G, Laine, M, Guerche, C, Loaec, M, Steinbach, D, Laporte, M A, Arnaud, E, Quesneville, H, Adam-Blondon, A F

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Studying the organization of genes encoding plant cell wall degrading enzymes in Chrysomela tremula provides insights into a leaf beetle genome von Pauchet, Y., Saski, C. A., Feltus, F. A., Luyten, I., Quesneville, H., Heckel, D. G.

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Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element von Quesneville, H, Nouaud, D, Anxolabehere, D

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Towards an open grapevine information system von Adam-Blondon, A-F, Alaux, M, Pommier, C, Cantu, D, Cheng, Z-M, Cramer, GR, Davies, C, Delrot, S, Deluc, L, Di Gaspero, G, Grimplet, J, Fennell, A, Londo, JP, Kersey, P, Mattivi, F, Naithani, S, Neveu, P, Nikolski, M, Pezzotti, M, Reisch, BI, Töpfer, R, Vivier, MA, Ware, D, Quesneville, H

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Mining Plant Genomic and Genetic Data Using the GnpIS Information System von Adam-Blondon, A.-F., Alaux, M., Durand, S., Letellier, T., Merceron, G., Mohellibi, N., Pommier, C., Steinbach, D., Alfama, F., Amselem, J., Charruaud, D., Choisne, N., Flores, R., Guerche, C., Jamilloux, V., Kimmel, E., Lapalu, N., Loaec, M., Michotey, C., Quesneville, H.

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Considering transposable element diversification in de novo annotation approaches von Flutre, Timothée, Duprat, Elodie, Feuillet, Catherine, Quesneville, Hadi

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Combined evidence annotation of transposable elements in genome sequences von Quesneville, Hadi, Bergman, Casey M, Andrieu, Olivier, Autard, Delphine, Nouaud, Danielle, Ashburner, Michael, Anxolabehere, Dominique

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A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits von Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., Van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S., Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J., Foucher, F.

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Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets von Buisine, Nicolas, Quesneville, Hadi, Colot, Vincent

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Search for multifactorial disease susceptibility genes in founder populations von BOURGAIN, C., GENIN, E., QUESNEVILLE, H., CLERGET-DARPOUX, F.

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Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots" von Drouaud, Jan, Camilleri, Christine, Bourguignon, Pierre-Yves, Canaguier, Aurélie, Bérard, Aurélie, Vezon, Daniel, Giancola, Sandra, Brunel, Dominique, Colot, Vincent, Prum, Bernard, Quesneville, Hadi, Mézard, Christine

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LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss von Vitte, Clémentine, Panaud, Olivier, Quesneville, Hadi

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Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon von Amselem, J, Vigouroux, M, Oberhaensli, S, Brown, JKM, Bindschedler, LV, Skamnioti, P, Wicker, T, Spanu, PD, Quesneville, H, Sacristan, S

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Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo‐ and neoduplicated subgenomes von Pont, Caroline, Murat, Florent, Guizard, Sébastien, Flores, Raphael, Foucrier, Séverine, Bidet, Yannick, Quraishi, Umar Masood, Alaux, Michael, Doležel, Jaroslav, Fahima, Tzion, Budak, Hikmet, Keller, Beat, Salvi, Silvio, Maccaferri, Marco, Steinbach, Delphine, Feuillet, Catherine, Quesneville, Hadi, Salse, Jérôme

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Obligate biotrophy features unraveled by the genomic analysis of rust fungi von Duplessis, Sébastien, Cuomo, Christina A, Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L, Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L, Chiu, Readman, Coutinho, Pedro M, Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G, Kodira, Chinnappa D, Kohler, Annegret, Kües, Ursula, Lindquist, Erika A, Lucas, Susan M, Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L, Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A, Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A, Henrissat, Bernard, Peer, Yves Van de, Rouzé, Pierre, Ellis, Jeffrey G, Dodds, Peter N, Schein, Jacqueline E, Zhong, Shaobin, Hamelin, Richard C, Grigoriev, Igor V, Szabo, Les J, Martin, Francis

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Studying the organization of genes encoding plant cell wall degrading enzymes in C hrysomela tremula provides insights into a leaf beetle genome von Pauchet, Y., Saski, C. A., Feltus, F. A., Luyten, I., Quesneville, H., Heckel, D. G.

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Indication of linkage and genetic heterogeneity for asthma and atopy on chromosomes 8p and 12q in 107 French EGEA families von DIZIER, M.-H, QUESNEVILLE, H, BESSE-SCHMITTLER, C, GUILLOUD-BATAILLE, M, SELINGER-LENEMAN, H, CLERGET-DARPOUX, F, DEMENAIS, F

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The triangle test statistic (TTS): a test of genetic homogeneity using departure from the triangle constraints in IBD distribution among affected sib-pairs von DIZIER, M. H., QUESNEVILLE, H., PRUM, B., SELINGER-LENEMAN, H., CLERGET-DARPOUX, F.

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