Genome-wide DNA methylation analysis in an antimigraine-treated preclinical model of cortical spreading depolarization von Vila-Pueyo, Marta, Cuenca-León, Ester, Queirós, Ana C., Kulis, Marta, Sintas, Cèlia, Cormand, Bru, Martín-Subero, José Ignacio, Pozo-Rosich, Patricia, Fernàndez-Castillo, Noèlia, Macaya, Alfons

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Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer von Kulis, Marta, Queirós, Ana C., Beekman, Renée, Martín-Subero, José I.

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Quantitative comparison of DNA methylation assays for biomarker development and clinical applications von Bock, Christoph, Halbritter, Florian, Carmona, Francisco J, Tierling, Sascha, Datlinger, Paul, Assenov, Yassen, Berdasco, María, Bergmann, Anke K, Booher, Keith, Busato, Florence, Campan, Mihaela, Dahl, Christina, Dahmcke, Christina M, Diep, Dinh, Fernández, Agustín F, Gerhauser, Clarissa, Haake, Andrea, Heilmann, Katharina, Holcomb, Thomas, Hussmann, Dianna, Ito, Mitsuteru, Kläver, Ruth, Kreutz, Martin, Kulis, Marta, Lopez, Virginia, Nair, Shalima S, Paul, Dirk S, Plongthongkum, Nongluk, Qu, Wenjia, Queirós, Ana C, Reinicke, Frank, Sauter, Guido, Schlomm, Thorsten, Statham, Aaron, Stirzaker, Clare, Strogantsev, Ruslan, Urdinguio, Rocío G, Walter, Kimberly, Weichenhan, Dieter, Weisenberger, Daniel J, Beck, Stephan, Clark, Susan J, Esteller, Manel, Ferguson-Smith, Anne C, Fraga, Mario F, Guldberg, Per, Hansen, Lise Lotte, Laird, Peter W, Martín-Subero, José I, Nygren, Anders O H, Peist, Ralf, Plass, Christoph, Shames, David S, Siebert, Reiner, Sun, Xueguang, Tost, Jörg, Walter, Jörn, Zhang, Kun

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Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia von Kulis, Marta, Heath, Simon, Bibikova, Marina, Queirós, Ana C, Navarro, Alba, Clot, Guillem, Martínez-Trillos, Alejandra, Castellano, Giancarlo, Brun-Heath, Isabelle, Pinyol, Magda, Barberán-Soler, Sergio, Papasaikas, Panagiotis, Jares, Pedro, Beà, Sílvia, Rico, Daniel, Ecker, Simone, Rubio, Miriam, Royo, Romina, Ho, Vincent, Klotzle, Brandy, Hernández, Lluis, Conde, Laura, López-Guerra, Mónica, Colomer, Dolors, Villamor, Neus, Aymerich, Marta, Rozman, María, Bayes, Mónica, Gut, Marta, Gelpí, Josep L, Orozco, Modesto, Fan, Jian-Bing, Quesada, Víctor, Puente, Xose S, Pisano, David G, Valencia, Alfonso, López-Guillermo, Armando, Gut, Ivo, López-Otín, Carlos, Campo, Elías, Martín-Subero, José I

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Decoding the DNA Methylome of Mantle Cell Lymphoma in the Light of the Entire B Cell Lineage von Queirós, Ana C., Beekman, Renée, Vilarrasa-Blasi, Roser, Duran-Ferrer, Martí, Clot, Guillem, Merkel, Angelika, Raineri, Emanuele, Russiñol, Nuria, Castellano, Giancarlo, Beà, Sílvia, Navarro, Alba, Kulis, Marta, Verdaguer-Dot, Núria, Jares, Pedro, Enjuanes, Anna, Calasanz, María José, Bergmann, Anke, Vater, Inga, Salaverría, Itziar, van de Werken, Harmen J.G., Wilson, Wyndham H., Datta, Avik, Flicek, Paul, Royo, Romina, Martens, Joost, Giné, Eva, Lopez-Guillermo, Armando, Stunnenberg, Hendrik G., Klapper, Wolfram, Pott, Christiane, Heath, Simon, Gut, Ivo G., Siebert, Reiner, Campo, Elías, Martín-Subero, José I.

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Patient-Derived Multiple Myeloma 3D Models for Personalized Medicine—Are We There Yet? von Lourenço, Diana, Lopes, Raquel, Pestana, Carolina, Queirós, Ana C., João, Cristina, Carneiro, Emilie Arnault

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Cell-Cycle-Dependent Reconfiguration of the DNA Methylome during Terminal Differentiation of Human B Cells into Plasma Cells von Caron, Gersende, Hussein, Mourad, Kulis, Marta, Delaloy, Céline, Chatonnet, Fabrice, Pignarre, Amandine, Avner, Stéphane, Lemarié, Maud, Mahé, Elise A., Verdaguer-Dot, Núria, Queirós, Ana C., Tarte, Karin, Martín-Subero, José I., Salbert, Gilles, Fest, Thierry

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Multiple Myeloma-Derived Extracellular Vesicles Modulate the Bone Marrow Immune Microenvironment von Lopes, Raquel, Caetano, Joana, Barahona, Filipa, Pestana, Carolina, Ferreira, Bruna Velosa, Lourenço, Diana, Queirós, Ana C., Bilreiro, Carlos, Shemesh, Noam, Beck, Hans Christian, Carvalho, Ana Sofia, Matthiesen, Rune, Bogen, Bjarne, Costa-Silva, Bruno, Serre, Karine, Carneiro, Emilie Arnault, João, Cristina

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Insights into the mechanisms underlying aberrant SOX11 oncogene expression in mantle cell lymphoma von Vilarrasa-Blasi, Roser, Verdaguer-Dot, Núria, Belver, Laura, Soler-Vila, Paula, Beekman, Renée, Chapaprieta, Vicente, Kulis, Marta, Queirós, Ana C., Parra, Maribel, Calasanz, María José, Agirre, Xabier, Prosper, Felipe, Beà, Sílvia, Colomer, Dolors, Marti-Renom, Marc A., Ferrando, Adolfo, Campo, Elías, Martin-Subero, José Ignacio

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Detection of chromothripsis-like patterns with a custom array platform for chronic lymphocytic leukemia von Salaverria, Itziar, Martín-Garcia, David, López, Cristina, Clot, Guillem, García-Aragonés, Manel, Navarro, Alba, Delgado, Julio, Baumann, Tycho, Pinyol, Magda, Martin-Guerrero, Idoia, Carrió, Ana, Costa, Dolors, Queirós, Ana C., Jayne, Sandrine, Aymerich, Marta, Villamor, Neus, Colomer, Dolors, González, Marcos, López-Guillermo, Armando, Campo, Elías, Dyer, Martin J. S., Siebert, Reiner, Armengol, Lluís, Beà, Sílvia

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The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome von Duran-Ferrer, Martí, Clot, Guillem, Nadeu, Ferran, Beekman, Renée, Baumann, Tycho, Nordlund, Jessica, Marincevic-Zuniga, Yanara, Lönnerholm, Gudmar, Rivas-Delgado, Alfredo, Martín, Silvia, Ordoñez, Raquel, Castellano, Giancarlo, Kulis, Marta, Queirós, Ana C, Lee, Seung-Tae, Wiemels, Joseph, Royo, Romina, Puiggrós, Montserrat, Lu, Junyan, Giné, Eva, Beà, Sílvia, Jares, Pedro, Agirre, Xabier, Prosper, Felipe, López-Otín, Carlos, Puente, Xosé S, Oakes, Christopher C, Zenz, Thorsten, Delgado, Julio, López-Guillermo, Armando, Campo, Elías, Martín-Subero, José Ignacio

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DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy von Tsagiopoulou, Maria, Papakonstantinou, Nikos, Moysiadis, Theodoros, Mansouri, Larry, Ljungström, Viktor, Duran-Ferrer, Martí, Malousi, Andigoni, Queirós, Ana C, Plevova, Karla, Bhoi, Sujata, Kollia, Panagoula, Oscier, David, Anagnostopoulos, Achilles, Trentin, Livio, Ritgen, Matthias, Pospisilova, Sarka, Stavroyianni, Niki, Ghia, Paolo, Martin-Subero, Jose I, Pott, Christiane, Rosenquist, Richard, Stamatopoulos, Kostas

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Broadened T-cell Repertoire Diversity in ivIg-treated SLE Patients is Also Related to the Individual Status of Regulatory T-cells von Costa, Nuno, Pires, Ana E., Gabriel, Ana M., Goulart, Luiz F., Pereira, Clara, Leal, Bárbara, Queiros, Ana C., Chaara, Wahiba, Moraes-Fontes, Maria F., Vasconcelos, Carlos, Ferreira, Carlos, Martins, Jorge, Bastos, Marina, Santos, Maria J., Pereira, Maria A., Martins, Berta, Lima, Margarida, João, Cristina, Six, Adrien, Demengeot, Jocelyne, Fesel, Constantin

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The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia von Beekman, Renée, Chapaprieta, Vicente, Russiñol, Núria, Vilarrasa-Blasi, Roser, Verdaguer-Dot, Núria, Martens, Joost H. A., Duran-Ferrer, Martí, Kulis, Marta, Serra, François, Javierre, Biola M., Wingett, Steven W., Clot, Guillem, Queirós, Ana C., Castellano, Giancarlo, Blanc, Julie, Gut, Marta, Merkel, Angelika, Heath, Simon, Vlasova, Anna, Ullrich, Sebastian, Palumbo, Emilio, Enjuanes, Anna, Martín-García, David, Beà, Sílvia, Pinyol, Magda, Aymerich, Marta, Royo, Romina, Puiggros, Montserrat, Torrents, David, Datta, Avik, Lowy, Ernesto, Kostadima, Myrto, Roller, Maša, Clarke, Laura, Flicek, Paul, Agirre, Xabier, Prosper, Felipe, Baumann, Tycho, Delgado, Julio, López-Guillermo, Armando, Fraser, Peter, Yaspo, Marie-Laure, Guigó, Roderic, Siebert, Reiner, Martí-Renom, Marc A., Puente, Xose S., López-Otín, Carlos, Gut, Ivo, Stunnenberg, Hendrik G., Campo, Elias, Martin-Subero, Jose I.

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Whole-genome fingerprint of the DNA methylome during human B cell differentiation von Kulis, Marta, Merkel, Angelika, Heath, Simon, Queirós, Ana C, Schuyler, Ronald P, Castellano, Giancarlo, Beekman, Renée, Raineri, Emanuele, Esteve, Anna, Clot, Guillem, Verdaguer-Dot, Néria, Duran-Ferrer, Martí, Russiñol, Nuria, Vilarrasa-Blasi, Roser, Ecker, Simone, Pancaldi, Vera, Rico, Daniel, Agueda, Lidia, Blanc, Julie, Richardson, David, Clarke, Laura, Datta, Avik, Pascual, Marien, Agirre, Xabier, Prosper, Felipe, Alignani, Diego, Paiva, Bruno, Caron, Gersende, Fest, Thierry, Muench, Marcus O, Fomin, Marina E, Lee, Seung-Tae, Wiemels, Joseph L, Valencia, Alfonso, Gut, Marta, Flicek, Paul, Stunnenberg, Hendrik G, Siebert, Reiner, Küppers, Ralf, Gut, Ivo G, Campo, Elías, Martín-Subero, José I

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Active regulatory T-cells contribute to broadened T-cell repertoire diversity in ivIg-treated SLE patients von Costa, Nuno, Pires, Ana E, Gabriel, Ana M, Goulart, Luiz F, Pereira, Clara, Leal, Barbara, Queiros, Ana C, Chaara, Wahiba, Moraes-Fontes, Maria F, Vasconcelos, Carlos, Ferreira, Carlos, Martins, Jorge, Bastos, Marina, Santos, Maria J, Pereira, Maria A, Martins, Berta, Lima, Margarida, João, Cristina, Six, Adrien, Demengeot, Jocelyne, Fesel, Constantin

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Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers von Agirre, Xabier, Castellano, Giancarlo, Pascual, Marien, Heath, Simon, Kulis, Marta, Segura, Victor, Bergmann, Anke, Esteve, Anna, Merkel, Angelika, Raineri, Emanuele, Agueda, Lidia, Blanc, Julie, Richardson, David, Clarke, Laura, Datta, Avik, Russiñol, Nuria, Queirós, Ana C, Beekman, Renée, Rodríguez-Madoz, Juan R, San José-Enériz, Edurne, Fang, Fang, Gutiérrez, Norma C, García-Verdugo, José M, Robson, Michael I, Schirmer, Eric C, Guruceaga, Elisabeth, Martens, Joost H A, Gut, Marta, Calasanz, Maria J, Flicek, Paul, Siebert, Reiner, Campo, Elías, Miguel, Jesús F San, Melnick, Ari, Stunnenberg, Hendrik G, Gut, Ivo G, Prosper, Felipe, Martín-Subero, José I

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Non-coding recurrent mutations in chronic lymphocytic leukaemia von Puente, Xose S., Beà, Silvia, Valdés-Mas, Rafael, Villamor, Neus, Gutiérrez-Abril, Jesús, Martín-Subero, José I., Munar, Marta, Rubio-Pérez, Carlota, Jares, Pedro, Aymerich, Marta, Baumann, Tycho, Beekman, Renée, Belver, Laura, Carrio, Anna, Castellano, Giancarlo, Clot, Guillem, Colado, Enrique, Colomer, Dolors, Costa, Dolors, Delgado, Julio, Enjuanes, Anna, Estivill, Xavier, Ferrando, Adolfo A., Gelpí, Josep L., González, Blanca, González, Santiago, González, Marcos, Gut, Marta, Hernández-Rivas, Jesús M., López-Guerra, Mónica, Martín-García, David, Navarro, Alba, Nicolás, Pilar, Orozco, Modesto, Payer, Ángel R., Pinyol, Magda, Pisano, David G., Puente, Diana A., Queirós, Ana C., Quesada, Víctor, Romeo-Casabona, Carlos M., Royo, Cristina, Royo, Romina, Rozman, María, Russiñol, Nuria, Salaverría, Itziar, Stamatopoulos, Kostas, Stunnenberg, Hendrik G., Tamborero, David, Terol, María J., Valencia, Alfonso, López-Bigas, Nuria, Torrents, David, Gut, Ivo, López-Guillermo, Armando, López-Otín, Carlos, Campo, Elías

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DNA hypomethylation affects cancer-related biological functions and genes relevant in neuroblastoma pathogenesis von Mayol, Gemma, Martín-Subero, José I, Ríos, José, Queiros, Ana, Kulis, Marta, Suñol, Mariona, Esteller, Manel, Gómez, Soledad, Garcia, Idoia, de Torres, Carmen, Rodríguez, Eva, Galván, Patricia, Mora, Jaume, Lavarino, Cinzia

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Genome-wide DNA methylation analysis in an antimigraine-treated preclinical model of cortical spreading depolarization von Vila-Pueyo, Marta, Cuenca León, Ester, Queirós, Ana C, Kulis, Marta, Sintas Vives, Cèlia, Cormand Rifà, Bru, Martín-Subero, José Ignacio, Pozo-Rosich, Patricia, Fernàndez Castillo, Noèlia, Macaya Ruiz, Alfons

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