Integrated proteomic analysis of post-translational modifications by serial enrichment von Mertins, Philipp, Qiao, Jana W, Patel, Jinal, Udeshi, Namrata D, Clauser, Karl R, Mani, D R, Burgess, Michael W, Gillette, Michael A, Jaffe, Jacob D, Carr, Steven A

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Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments von Udeshi, Namrata D., Svinkina, Tanya, Mertins, Philipp, Kuhn, Eric, Mani, D.R., Qiao, Jana W., Carr, Steven A.

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Proteogenomics connects somatic mutations to signalling in breast cancer von Mertins, Philipp, Mani, D. R., Ruggles, Kelly V., Gillette, Michael A., Clauser, Karl R., Wang, Pei, Wang, Xianlong, Qiao, Jana W., Cao, Song, Petralia, Francesca, Kawaler, Emily, Mundt, Filip, Krug, Karsten, Tu, Zhidong, Lei, Jonathan T., Gatza, Michael L., Wilkerson, Matthew, Perou, Charles M., Yellapantula, Venkata, Huang, Kuan-lin, Lin, Chenwei, McLellan, Michael D., Yan, Ping, Davies, Sherri R., Townsend, R. Reid, Skates, Steven J., Wang, Jing, Zhang, Bing, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Ding, Li, Paulovich, Amanda G., Fenyö, David, Ellis, Matthew J., Carr, Steven A.

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Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels von Mertins, Philipp, Yang, Feng, Liu, Tao, Mani, D.R., Petyuk, Vladislav A., Gillette, Michael A., Clauser, Karl R., Qiao, Jana W., Gritsenko, Marina A., Moore, Ronald J., Levine, Douglas A., Townsend, Reid, Erdmann-Gilmore, Petra, Snider, Jacqueline E., Davies, Sherri R., Ruggles, Kelly V., Fenyo, David, Kitchens, R. Thomas, Li, Shunqiang, Olvera, Narciso, Dao, Fanny, Rodriguez, Henry, Chan, Daniel W., Liebler, Daniel, White, Forest, Rodland, Karin D., Mills, Gordon B., Smith, Richard D., Paulovich, Amanda G., Ellis, Matthew, Carr, Steven A.

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Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow[S] von Svinkina, Tanya, Gu, Hongbo, Silva, Jeffrey C., Mertins, Philipp, Qiao, Jana, Fereshetian, Shaunt, Jaffe, Jacob D., Kuhn, Eric, Udeshi, Namrata D., Carr, Steven A.

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Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes von Abelin, Jennifer G., Patel, Jinal, Lu, Xiaodong, Feeney, Caitlin M., Fagbami, Lola, Creech, Amanda L., Hu, Roger, Lam, Daniel, Davison, Desiree, Pino, Lindsay, Qiao, Jana W., Kuhn, Eric, Officer, Adam, Li, Jianxue, Abbatiello, Susan, Subramanian, Aravind, Sidman, Richard, Snyder, Evan, Carr, Steven A., Jaffe, Jacob D.

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Post-vaccination COVID Toes (Chilblains) Exacerbated by Rituximab Infusion Suggests Interferon Activation as Mechanism von Qiao, Jana W, Dan, Yongwook, Wolf, Michael E, Zoccoli, Christina M, Demetriou, Theodore J, Lennon, Robert P

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Functional Proteomic Analysis of Repressive Histone Methyltransferase Complexes Reveals ZNF518B as a G9A Regulator[S] von Maier, Verena K., Feeney, Caitlin M., Taylor, Jordan E., Creech, Amanda L., Qiao, Jana W., Szanto, Attila, Das, Partha P., Chevrier, Nicholas, Cifuentes-Rojas, Catherine, Orkin, Stuart H., Carr, Steven A., Jaffe, Jacob D., Mertins, Philipp, Lee, Jeannie T.

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An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling von Mertins, Philipp, Przybylski, Dariusz, Yosef, Nir, Qiao, Jana, Clauser, Karl, Raychowdhury, Raktima, Eisenhaure, Thomas M., Maritzen, Tanja, Haucke, Volker, Satoh, Takashi, Akira, Shizuo, Carr, Steven A., Regev, Aviv, Hacohen, Nir, Chevrier, Nicolas

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Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts von Huang, Kuan-Lin, Li, Shunqiang, Mertins, Philipp, Cao, Song, Gunawardena, Harsha P, Ruggles, Kelly V, Mani, D R, Clauser, Karl R, Tanioka, Maki, Usary, Jerry, Kavuri, Shyam M, Xie, Ling, Yoon, Christopher, Qiao, Jana W, Wrobel, John, Wyczalkowski, Matthew A, Erdmann-Gilmore, Petra, Snider, Jacqueline E, Hoog, Jeremy, Singh, Purba, Niu, Beifang, Guo, Zhanfang, Sun, Sam Qiancheng, Sanati, Souzan, Kawaler, Emily, Wang, Xuya, Scott, Adam, Ye, Kai, McLellan, Michael D, Wendl, Michael C, Malovannaya, Anna, Held, Jason M, Gillette, Michael A, Fenyö, David, Kinsinger, Christopher R, Mesri, Mehdi, Rodriguez, Henry, Davies, Sherri R, Perou, Charles M, Ma, Cynthia, Townsend, R Reid, Chen, Xian, Carr, Steven A, Ellis, Matthew J, Ding, Li

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Neuropeptidase activity is down-regulated by estradiol in steroid-sensitive regions of the hypothalamus in female mice von Bruce, Lisa A, Cyr, Nicole E, Qiao, Jana W, DeFries, Christa C, Tetel, Marc J, Wolfson, Adele J

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Correction: Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts von Huang, Kuan-lin, Li, Shunqiang, Mertins, Philipp, Cao, Song, Gunawardena, Harsha P., Ruggles, Kelly V., Mani, D. R., Clauser, Karl R., Tanioka, Maki, Usary, Jerry, Kavuri, Shyam M., Xie, Ling, Yoon, Christopher, Qiao, Jana W., Wrobel, John, Wyczalkowski, Matthew A., Erdmann-Gilmore, Petra, Snider, Jacqueline E., Hoog, Jeremy, Singh, Purba, Niu, Beifang, Guo, Zhanfang, Sun, Sam Qiancheng, Sanati, Souzan, Kawaler, Emily, Wang, Xuya, Scott, Adam, Ye, Kai, McLellan, Michael D., Wendl, Michael C., Malovannaya, Anna, Held, Jason M., Gillette, Michael A., Fenyö, David, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Davies, Sherri R., Perou, Charles M., Ma, Cynthia, Townsend, R. Reid, Chen, Xian, Carr, Steven A., Ellis, Matthew J., Ding, Li

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Proteogenomic integration reveals therapeutic targets in breast cancer xenografts von Huang, Kuan-lin, Li, Shunqiang, Mertins, Philipp, Cao, Song, Gunawardena, Harsha P., Ruggles, Kelly V., Mani, D. R., Clauser, Karl R., Tanioka, Maki, Usary, Jerry, Kavuri, Shyam M., Xie, Ling, Yoon, Christopher, Qiao, Jana W, Wrobel, John, Wyczalkowski, Matthew A., Erdmann-Gilmore, Petra, Snider, Jacqueline E., Hoog, Jeremy, Singh, Purba, Niu, Beifang, Guo, Zhanfang, Sun, Sam Qiancheng, Sanati, Souzan, Kawaler, Emily, Wang, Xuya, Scott, Adam, Ye, Kai, McLellan, Michael D., Wendl, Michael C., Malovannaya, Anna, Held, Jason M., Gillette, Michael A., Fenyö, David, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Davies, Sherri R., Perou, Charles M., Ma, Cynthia, Reid Townsend, R., Chen, Xian, Carr, Steven A., Ellis, Matthew J., Ding, Li

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Adaptive and Reversible Resistance to Kras Inhibition in Pancreatic Cancer Cells von Chen, Pan-Yu, Muzumdar, Mandar Deepak, Dorans, Kimberly Judith, Robbins, Rebecca, Bhutkar, Arjun, Del Rosario, Amanda, Mertins, Philipp, Qiao, Jana, Schafer, Anette Claudia, Gertler, Frank, Carr, Steven, Jacks, Tyler

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Abstract SY44-02: Proteogenomic and phosphoproteomic analysis of breast cancer von Mertins, Philipp, Mani, DR, Clauser, Karl, Gillette, Michael, Wang, Pei, Qiao, Jana, Fenyo, David, Ruggles, Kelly, Davies, Sherri, Zhang, Bing, Gatza, Michael, Wang, Sean, Yan, Ping, Lin, Chenwei, McLellan, Michael, Townsend, Reid, Ding, Li, Cao, Song, Rodriguez, Henry, Paulovich, Amanda, Ellis, Matthew, Carr, Steven A.

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Abstract C200: Effects of PI3K/Akt pathway inhibition on global proteome levels and phosphorylation signaling in patient-derived xenograft models of triple negative breast cancer von Mundt, Filip O., Ma, Cynthia, Mertins, Philipp, Guo, Zhanfang, Meyer, Matthew, Qiao, Jana, Mani, DR, Clauser, Karl, Li, Shunqiang, Huang, Kuan, Held, Jason, Davies, Sherri, Ruggles, Kelly, Ding, Li, Gillette, Michael, Fenyo, David, Townsend, Reid, Ellis, Matthew, Carr, Steven A.

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Effects of the neuropeptidase thimet oligopeptidase on testicular development and testosterone production von Dhawan, Tania, Qiao, Jana W., Selen, Daryl, Bruce, Lisa A., Tetel, Marc J., Wolfson, Adele J.

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Proteogenomics connects somatic mutations to signaling in breast cancer von Mertins, Philipp, Mani, D. R, Ruggles, Kelly V, Gillette, Michael A, Clauser, Karl R, Wang, Pei, Wang, Xianlong, Qiao, Jana W, Cao, Song, Petralia, Francesca, Kawaler, Emily, Mundt, Filip, Krug, Karsten, Tu, Zhidong, Lei, Jonathan T, Gatza, Michael L, Wilkerson, Matthew, Perou, Charles M, Yellapantula, Venkata, Huang, Kuan-lin, Lin, Chenwei, McLellan, Michael D, Yan, Ping, Davies, Sherri R, Townsend, R. Reid, Skates, Steven J, Wang, Jing, Zhang, Bing, Kinsinger, Christopher R, Mesri, Mehdi, Rodriguez, Henry, Ding, Li, Paulovich, Amanda G, Fenyo, David, Ellis, Matthew J, Carr, Steven A

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Abstract IA29: Proteogenomic and phosphoproteomic analysis of breast cancer von Mertins, Philipp, Mani, DR, Ruggles, Kelly, Gillette, Michael, Clauser, Karl, Wang, Pei, Wang, Xianlong, Qiao, Jana, Cao, Song, Petralia, Francesca, Mundt, Filip, Tu, Zhidong, Lei, Jonathan, Gatza, Michael, Wilkerson, Matthew, Perou, Charles, Yellapantula, Venkata, Huang, Kuan-lin, Lin, Chenwei, McLellan, Michael, Yan, Ping, Davies, Sherri, Townsend, Reid, Skates, Steven, Wang, Jing, Zhang, Bing, Kinsinger, Christopher, Mesri, Mehdi, Rodriguez, Henry, Ding, Li, Paulovich, Amanda, Fenyo, David, Ellis, Matthew, Carr, Steven

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Estradiol Regulates Neuropeptidase Activity in Hypothalamic Regions Involved in Regulating Gonadotropin‐Releasing Hormone von Qiao, Jana W., Cyr, Nicole E., Bruce, Lisa A., Tetel, Marc J., Wolfson, Adele J.

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