The three ghosts of medical AI: Can the black-box present deliver? von Quinn, Thomas P., Jacobs, Stephan, Senadeera, Manisha, Le, Vuong, Coghlan, Simon

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Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales von Tillotson, Michael D., Kelly, Ryan P., Duda, Jeffrey J., Hoy, Marshal, Kralj, James, Quinn, Thomas P.

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propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis von Quinn, Thomas P., Richardson, Mark F., Lovell, David, Crowley, Tamsyn M.

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Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome von Le, Vuong, Quinn, Thomas P, Tran, Truyen, Venkatesh, Svetha

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Reliance on lakes by salmon, trout and charr (Oncorhynchus, Salmo and Salvelinus): An evaluation of spawning habitats, rearing strategies and trophic polymorphisms von Arostegui, Martin C., Quinn, Thomas P.

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Population diversity and the portfolio effect in an exploited species von Schindler, Daniel E., Hilborn, Ray, Chasco, Brandon, Boatright, Christopher P., Quinn, Thomas P., Rogers, Lauren A., Webster, Michael S.

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Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods von Quinn, Thomas P, Crowley, Tamsyn M, Richardson, Mark F

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Ultrasmall targeted nanoparticles with engineered antibody fragments for imaging detection of HER2-overexpressing breast cancer von Chen, Feng, Ma, Kai, Madajewski, Brian, Zhuang, Li, Zhang, Li, Rickert, Keith, Marelli, Marcello, Yoo, Barney, Turker, Melik Z., Overholtzer, Michael, Quinn, Thomas P., Gonen, Mithat, Zanzonico, Pat, Tuesca, Anthony, Bowen, Michael A., Norton, Larry, Subramony, J. Anand, Wiesner, Ulrich, Bradbury, Michelle S.

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Evidence for Geomagnetic Imprinting as a Homing Mechanism in Pacific Salmon von Putman, Nathan F., Lohmann, Kenneth J., Putman, Emily M., Quinn, Thomas P., Klimley, A. Peter, Noakes, David L.G.

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Two decades of change in sea star abundance at a subtidal site in Puget Sound, Washington von Casendino, Helen R, McElroy, Katherine N, Sorel, Mark H, Quinn, Thomas P, Wood, Chelsea L

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Climate change alters the reproductive phenology and investment of a lacustrine fish, the three‐spine stickleback von Hovel, Rachel A., Carlson, Stephanie M., Quinn, Thomas P.

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An Inherited Magnetic Map Guides Ocean Navigation in Juvenile Pacific Salmon von Putman, Nathan F., Scanlan, Michelle M., Billman, Eric J., O’Neil, Joseph P., Couture, Ryan B., Quinn, Thomas P., Lohmann, Kenneth J., Noakes, David L.G.

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A collective navigation hypothesis for homeward migration in anadromous salmonids von Berdahl, Andrew, Westley, Peter A H, Levin, Simon A, Couzin, Iain D, Quinn, Thomas P

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Distinct evolutionary lineages of Schistocephalus parasites infecting co-occurring sculpin and stickleback fishes in Alaska von Heins, David C., Moody, Kristine N., Arostegui, Martin C., Harmon, Brian S., Blum, Michael J., Quinn, Thomas P.

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Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection von Quinn, Thomas P, Erb, Ionas

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GraphDTA: predicting drug–target binding affinity with graph neural networks von Nguyen, Thin, Le, Hang, Quinn, Thomas P, Nguyen, Tri, Le, Thuc Duy, Venkatesh, Svetha

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GS-CA Compounds: First-In-Class HIV-1 Capsid Inhibitors Covering Multiple Grounds von Singh, Kamal, Gallazzi, Fabio, Hill, Kyle J, Burke, Donald H, Lange, Margaret J, Quinn, Thomas P, Neogi, Ujjwal, Sönnerborg, Anders

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DeepTRIAGE: interpretable and individualised biomarker scores using attention mechanism for the classification of breast cancer sub-types von Beykikhoshk, Adham, Quinn, Thomas P, Lee, Samuel C, Tran, Truyen, Venkatesh, Svetha

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Artificial selection on reproductive timing in hatchery salmon drives a phenological shift and potential maladaptation to climate change von Tillotson, Michael D., Barnett, Heidy K., Bhuthimethee, Mary, Koehler, Michele E., Quinn, Thomas P.

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Biocomplexity and Fisheries Sustainability von Hilborn, Ray, Quinn, Thomas P., Schindler, Daniel E., Rogers, Donald E.

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