Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq von Qiu, Qi, Hu, Peng, Qiu, Xiaojie, Govek, Kiya W., Cámara, Pablo G., Wu, Hao

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The single-cell transcriptional landscape of mammalian organogenesis von Cao, Junyue, Spielmann, Malte, Qiu, Xiaojie, Huang, Xingfan, Ibrahim, Daniel M., Hill, Andrew J., Zhang, Fan, Mundlos, Stefan, Christiansen, Lena, Steemers, Frank J., Trapnell, Cole, Shendure, Jay

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Comprehensive single-cell transcriptional profiling of a multicellular organism von Cao, Junyue, Packer, Jonathan S., Ramani, Vijay, Cusanovich, Darren A., Huynh, Chau, Daza, Riza, Qiu, Xiaojie, Lee, Choli, Furlan, Scott N., Steemers, Frank J., Adey, Andrew, Waterston, Robert H., Trapnell, Cole, Shendure, Jay

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Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays von Chen, Ao, Liao, Sha, Cheng, Mengnan, Ma, Kailong, Wu, Liang, Lai, Yiwei, Qiu, Xiaojie, Yang, Jin, Xu, Jiangshan, Hao, Shijie, Wang, Xin, Lu, Huifang, Chen, Xi, Liu, Xing, Huang, Xin, Li, Zhao, Hong, Yan, Jiang, Yujia, Peng, Jian, Liu, Shuai, Shen, Mengzhe, Liu, Chuanyu, Li, Quanshui, Yuan, Yue, Wei, Xiaoyu, Zheng, Huiwen, Feng, Weimin, Wang, Zhifeng, Liu, Yang, Wang, Zhaohui, Yang, Yunzhi, Xiang, Haitao, Han, Lei, Qin, Baoming, Guo, Pengcheng, Lai, Guangyao, Muñoz-Cánoves, Pura, Maxwell, Patrick H., Thiery, Jean Paul, Wu, Qing-Feng, Zhao, Fuxiang, Chen, Bichao, Li, Mei, Dai, Xi, Wang, Shuai, Kuang, Haoyan, Hui, Junhou, Wang, Liqun, Fei, Ji-Feng, Wang, Ou, Wei, Xiaofeng, Lu, Haorong, Wang, Bo, Liu, Shiping, Gu, Ying, Ni, Ming, Zhang, Wenwei, Mu, Feng, Yin, Ye, Yang, Huanming, Lisby, Michael, Cornall, Richard J., Mulder, Jan, Uhlén, Mathias, Esteban, Miguel A., Li, Yuxiang, Liu, Longqi, Xu, Xun, Wang, Jian

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Storm: Incorporating transient stochastic dynamics to infer the RNA velocity with metabolic labeling information von Peng, Qiangwei, Qiu, Xiaojie, Li, Tiejun

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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data von Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole

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Thyroid hormone regulates distinct paths to maturation in pigment cell lineages von Saunders, Lauren M, Mishra, Abhishek K, Aman, Andrew J, Lewis, Victor M, Toomey, Matthew B, Packer, Jonathan S, Qiu, Xiaojie, McFaline-Figueroa, Jose L, Corbo, Joseph C, Trapnell, Cole, Parichy, David M

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Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model von Wang, Jiacheng, Chen, Yaojia, Zou, Quan

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The cis-regulatory dynamics of embryonic development at single-cell resolution von Cusanovich, Darren A., Reddington, James P., Garfield, David A., Daza, Riza M., Aghamirzaie, Delasa, Marco-Ferreres, Raquel, Pliner, Hannah A., Christiansen, Lena, Qiu, Xiaojie, Steemers, Frank J., Trapnell, Cole, Shendure, Jay, Furlong, Eileen E. M.

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Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis von Hanchate, Naresh K., Kondoh, Kunio, Lu, Zhonghua, Kuang, Donghui, Ye, Xiaolan, Qiu, Xiaojie, Pachter, Lior, Trapnell, Cole, Buck, Linda B.

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Wavelength detection of model-sharing fiber Bragg grating sensor networks using long short-term memory neural network von Jiang, Hao, Zeng, Qiying, Chen, Jing, Qiu, Xiaojie, Liu, Xinyu, Chen, Zhenghua, Miao, Xiren

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Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution von Yang, Dian, Jones, Matthew G., Naranjo, Santiago, Rideout, William M., Min, Kyung Hoi (Joseph), Ho, Raymond, Wu, Wei, Replogle, Joseph M., Page, Jennifer L., Quinn, Jeffrey J., Horns, Felix, Qiu, Xiaojie, Chen, Michael Z., Freed-Pastor, William A., McGinnis, Christopher S., Patterson, David M., Gartner, Zev J., Chow, Eric D., Bivona, Trever G., Chan, Michelle M., Yosef, Nir, Jacks, Tyler, Weissman, Jonathan S.

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Insulator Fault Detection in Aerial Images Based on Ensemble Learning With Multi-Level Perception von Jiang, Hao, Qiu, Xiaojie, Chen, Jing, Liu, Xinyu, Miao, Xiren, Zhuang, Shengbin

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Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration von Wei, Xiaoyu, Fu, Sulei, Li, Hanbo, Liu, Yang, Wang, Shuai, Feng, Weimin, Yang, Yunzhi, Liu, Xiawei, Zeng, Yan-Yun, Cheng, Mengnan, Lai, Yiwei, Qiu, Xiaojie, Wu, Liang, Zhang, Nannan, Jiang, Yujia, Xu, Jiangshan, Su, Xiaoshan, Peng, Cheng, Han, Lei, Lou, Wilson Pak-Kin, Liu, Chuanyu, Yuan, Yue, Ma, Kailong, Yang, Tao, Pan, Xiangyu, Gao, Shang, Chen, Ao, Esteban, Miguel A., Yang, Huanming, Wang, Jian, Fan, Guangyi, Liu, Longqi, Chen, Liang, Xu, Xun, Fei, Ji-Feng, Gu, Ying

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Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe von Qiu, Xiaojie, Rahimzamani, Arman, Wang, Li, Ren, Bingcheng, Mao, Qi, Durham, Timothy, McFaline-Figueroa, José L., Saunders, Lauren, Trapnell, Cole, Kannan, Sreeram

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Research on Virtual Track Train Path-Tracking Control Based on Improved MPC and Hierarchical Framework: A Reconfigurable Approach von Wang, Zehan, Lu, Zhenggang, Wei, Juyao, Qiu, Xiaojie

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Functional characterization and transcriptional activity analysis of Dryopteris fragrans farnesyl diphosphate synthase genes von Zhang, Dongrui, Tang, Xun, Chen, Lingling, Qiu, Xiaojie, Song, Chunhua, Wang, Hemeng, Chang, Ying

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Fusing unscented Kalman filter for performance monitoring and fault accommodation in gas turbine von Lu, Feng, Wang, Yafan, Huang, Jinquan, Huang, Yihuan, Qiu, Xiaojie

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Electrospinning of ZIF-67 Derived Co-C-N Composite Efficiently Activating Peroxymonosulfate to Degrade Dimethyl Phthalate von Pang, Guowei, Ji, Min, Li, Zhuoran, Yang, Zhengwu, Qiu, Xiaojie, Zhao, Yingxin

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Effects of dietary arginine levels and carbohydrate-to-lipid ratios on mRNA expression of growth-related hormones in largemouth bass, Micropterus salmoides von Chen, Naisong, Jin, Lina, Zhou, Hengyong, Qiu, Xiaojie

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