Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR von Olson, Robert D, Assaf, Rida, Brettin, Thomas, Conrad, Neal, Cucinell, Clark, Davis, James J, Dempsey, Donald M, Dickerman, Allan, Dietrich, Emily M, Kenyon, Ronald W, Kuscuoglu, Mehmet, Lefkowitz, Elliot J, Lu, Jian, Machi, Dustin, Macken, Catherine, Mao, Chunhong, Niewiadomska, Anna, Nguyen, Marcus, Olsen, Gary J, Overbeek, Jamie C, Parrello, Bruce, Parrello, Victoria, Porter, Jacob S, Pusch, Gordon D, Shukla, Maulik, Singh, Indresh, Stewart, Lucy, Tan, Gene, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Wallace, Zachary S, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung, Zhang, Yun, Zmasek, Christian M, Scheuermann, Richard H, Stevens, Rick L

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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) von Overbeek, Ross, Olson, Robert, Pusch, Gordon D, Olsen, Gary J, Davis, James J, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R, Xia, Fangfang, Stevens, Rick

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Phylogenetic conservatism of functional traits in microorganisms von Martiny, Adam C, Treseder, Kathleen, Pusch, Gordon

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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes von Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang

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SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models von Aziz, Ramy K, Devoid, Scott, Disz, Terrence, Edwards, Robert A, Henry, Christopher S, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Stevens, Rick L, Vonstein, Veronika, Xia, Fangfang

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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center von Wattam, Alice R, Davis, James J, Assaf, Rida, Boisvert, Sébastien, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Dietrich, Emily M, Disz, Terry, Gabbard, Joseph L, Gerdes, Svetlana, Henry, Christopher S, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olsen, Gary J, Murphy-Olson, Daniel E, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung, Stevens, Rick L

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Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC von Parrello, Bruce, Butler, Rory, Chlenski, Philippe, Pusch, Gordon D, Overbeek, Ross

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PATRIC, the bacterial bioinformatics database and analysis resource von Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W

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The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities von Davis, James J, Wattam, Alice R, Aziz, Ramy K, Brettin, Thomas, Butler, Ralph, Butler, Rory M, Chlenski, Philippe, Conrad, Neal, Dickerman, Allan, Dietrich, Emily M, Gabbard, Joseph L, Gerdes, Svetlana, Guard, Andrew, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Dan, Nguyen, Marcus, Nordberg, Eric K, Olsen, Gary J, Olson, Robert D, Overbeek, Jamie C, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Xia, Fangfang, Xie, Dawen, Yoo, Hyunseung, Stevens, Rick

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PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database von Davis, James J, Gerdes, Svetlana, Olsen, Gary J, Olson, Robert, Pusch, Gordon D, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R, Yoo, Hyunseung

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Phage Genome Annotation Using the RAST Pipeline von McNair, Katelyn, Aziz, Ramy Karam, Pusch, Gordon D., Overbeek, Ross, Dutilh, Bas E., Edwards, Robert

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The RAST Server: rapid annotations using subsystems technology von Aziz, Ramy K, Bartels, Daniela, Best, Aaron A, DeJongh, Matthew, Disz, Terrence, Edwards, Robert A, Formsma, Kevin, Gerdes, Svetlana, Glass, Elizabeth M, Kubal, Michael, Meyer, Folker, Olsen, Gary J, Olson, Robert, Osterman, Andrei L, Overbeek, Ross A, McNeil, Leslie K, Paarmann, Daniel, Paczian, Tobias, Parrello, Bruce, Pusch, Gordon D, Reich, Claudia, Stevens, Rick, Vassieva, Olga, Vonstein, Veronika, Wilke, Andreas, Zagnitko, Olga

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A machine learning-based service for estimating quality of genomes using PATRIC von Parrello, Bruce, Butler, Rory, Chlenski, Philippe, Olson, Robert, Overbeek, Jamie, Pusch, Gordon D, Vonstein, Veronika, Overbeek, Ross

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Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center von Wattam, Alice R., Brettin, Thomas, Davis, James J., Gerdes, Svetlana, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Olson, Robert, Overbeek, Ross, Pusch, Gordon D., Shukla, Maulik P., Stevens, Rick, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung

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PATRIC as a unique resource for studying antimicrobial resistance von Antonopoulos, Dionysios A, Assaf, Rida, Aziz, Ramy Karam, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Davis, James J, Dietrich, Emily M, Disz, Terry, Gerdes, Svetlana, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Daniel E, Nordberg, Eric K, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Santerre, John, Shukla, Maulik, Stevens, Rick L, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung

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A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes von VanOeffelen, Margo, Nguyen, Marcus, Aytan-Aktug, Derya, Brettin, Thomas, Dietrich, Emily M, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Olson, Robert, Pusch, Gordon D, Shukla, Maulik, Stevens, Rick, Vonstein, Veronika, Warren, Andrew S, Wattam, Alice R, Yoo, Hyunseung, Davis, James J

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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus von Bolotin, A, Quinquis, B, Renault, P, Sorokin, A, Ehrlich, S.D, Kulakauskas, S, Lapidus, A, Goltsman, E, Mazur, M, Pusch, G.D

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The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes von Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika

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Real Time Metagenomics: Using k-mers to annotate metagenomes von EDWARDS, Robert A, OLSON, Robert, DISZ, Terry, PUSCH, Gordon D, VONSTEIN, Veronika, STEVENS, Rick, OVERBEEK, Ross

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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome mod... von Boissy, Robert, Ahmed, Azad, Janto, Benjamin, Earl, Josh, Hall, Barry G, Hogg, Justin S, Pusch, Gordon D, Hiller, Luisa N, Powell, Evan, Hayes, Jay, Yu, Susan, Kathju, Sandeep, Stoodley, Paul, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z

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