dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms von Puritz, Jonathan B, Hollenbeck, Christopher M, Gold, John R

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Demystifying the RAD fad von Puritz, Jonathan B., Matz, Mikhail V., Toonen, Robert J., Weber, Jesse N., Bolnick, Daniel I., Bird, Christopher E.

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Quantifying dispersal variability among nearshore marine populations von Catalano, Katrina A., Dedrick, Allison G., Stuart, Michelle R., Puritz, Jonathan B., Montes, Humberto R., Pinsky, Malin L.

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Extensive genome-wide duplications in the eastern oyster ( Crassostrea virginica ) von Modak, Tejashree H, Literman, Robert, Puritz, Jonathan B, Johnson, Kevin M, Roberts, Erin M, Proestou, Dina, Guo, Ximing, Gomez-Chiarri, Marta, Schwartz, Rachel S

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ezRAD: a simplified method for genomic genotyping in non-model organisms von Toonen, Robert J, Puritz, Jonathan B, Forsman, Zac H, Whitney, Jonathan L, Fernandez-Silva, Iria, Andrews, Kimberly R, Bird, Christopher E

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Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms von Puritz, Jonathan B, Addison, Jason A, Toonen, Robert J

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A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io von Bogan, Samuel N., Johns, Jason, Griffiths, Joanna S., Davenport, Danielle, Smith, Sara J., Schaal, Sara M., Downey‐Wall, Alan, Lou, Runyang Nicolas, Lotterhos, Katie, Guidry, Megan E., Rivera, Hanny E., McGirr, Joseph A., Puritz, Jonathan B., Roberts, Steven B., Silliman, Katherine

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These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists von O'Leary, Shannon J., Puritz, Jonathan B., Willis, Stuart C., Hollenbeck, Christopher M., Portnoy, David S.

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A decade of seascape genetics: contributions to basic and applied marine connectivity von Selkoe, Kimberly A., D’Aloia, Cassidy C., Crandall, Eric D., Iacchei, Matthew, Liggins, Libby, Puritz, Jonathan B., von der Heyden, Sophie, Toonen, Robert J.

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Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus von Schiebelhut, Lauren M., Puritz, Jonathan B., Dawson, Michael N

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Life‐history predicts past and present population connectivity in two sympatric sea stars von Puritz, Jonathan B., Keever, Carson C., Addison, Jason A., Barbosa, Sergio S., Byrne, Maria, Hart, Michael W., Grosberg, Richard K., Toonen, Robert J.

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Expressed exome capture sequencing: A method for cost‐effective exome sequencing for all organisms von Puritz, Jonathan B., Lotterhos, Katie E.

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Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage von Willis, Stuart C., Hollenbeck, Christopher M., Puritz, Jonathan B., Gold, John R., Portnoy, David S.

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Genomic analysis of red snapper, Lutjanus campechanus, population structure in the U.S. Atlantic and Gulf of Mexico von Portnoy, David S, Fields, Andrew T, Puritz, Jonathan B, Hollenbeck, Christopher M, Patterson, William F

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A second unveiling: Haplotig masking of the eastern oyster genome improves population‐level inference von Puritz, Jonathan B., Guo, Ximing, Hare, Matthew, He, Yan, Hillier, LaDeana W., Jin, Shubo, Liu, Ming, Lotterhos, Katie E., Minx, Pat, Modak, Tejashree, Proestou, Dina, Rice, Edward S., Tomlinson, Chad, Warren, Wesley C., Witkop, Erin, Zhao, Honggang, Gomez‐Chiarri, Marta

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Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica von Guo, Ximing, Puritz, Jonathan B., Wang, Zhenwei, Proestou, Dina, Allen, Standish, Small, Jessica, Verbyla, Klara, Zhao, Honggang, Haggard, Jaime, Chriss, Noah, Zeng, Dan, Lundgren, Kathryn, Allam, Bassem, Bushek, David, Gomez-Chiarri, Marta, Hare, Matthew, Hollenbeck, Christopher, La Peyre, Jerome, Liu, Ming, Lotterhos, Katie E., Plough, Louis, Rawson, Paul, Rikard, Scott, Saillant, Eric, Varney, Robin, Wikfors, Gary, Wilbur, Ami

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Genetic recruitment patterns are patchy and spatiotemporally unpredictable in a deep-water snapper (Lutjanus vivanus) sampled in fished and protected areas of western Puerto Rico von Willis, Stuart C., Hollenbeck, Christopher M., Puritz, Jonathan B., Portnoy, David S.

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Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences von Puritz, Jonathan B., Gold, John R., Portnoy, David S.

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Coastal pollution limits pelagic larval dispersal von Puritz, Jonathan B., Toonen, Robert J.

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Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases von Trigg, Shelly A., Venkataraman, Yaamini R., Gavery, Mackenzie R., Roberts, Steven B., Bhattacharya, Debashish, Downey‐Wall, Alan, Eirin‐Lopez, Jose M., Johnson, Kevin M., Lotterhos, Katie E., Puritz, Jonathan B., Putnam, Hollie M.

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