Molecular Analysis of the Bacterial Microbiota in the Human Stomach von Bik, Elisabeth M., Eckburg, Paul B., Gill, Steven R., Nelson, Karen E., Purdom, Elizabeth A., Francois, Fritz, Perez-Perez, Guillermo, Blaser, Martin J., Relman, David A.

Volltext

Drought and host selection influence bacterial community dynamics in the grass root microbiome von Naylor, Dan, DeGraaf, Stephanie, Purdom, Elizabeth, Coleman-Derr, Devin

Volltext

Cobolt: integrative analysis of multimodal single-cell sequencing data von Gong, Boying, Zhou, Yun, Purdom, Elizabeth

Volltext

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments von Bullard, James H, Purdom, Elizabeth, Hansen, Kasper D, Dudoit, Sandrine

Volltext

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics von Street, Kelly, Risso, Davide, Fletcher, Russell B, Das, Diya, Ngai, John, Yosef, Nir, Purdom, Elizabeth, Dudoit, Sandrine

Volltext

Visualizing scRNA-Seq data at population scale with GloScope von Wang, Hao, Torous, William, Gong, Boying, Purdom, Elizabeth

Volltext

Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities von Gao, Cheng, Xu, Ling, Montoya, Liliam, Madera, Mary, Hollingsworth, Joy, Chen, Liang, Purdom, Elizabeth, Singan, Vasanth, Vogel, John, Hutmacher, Robert B., Dahlberg, Jeffery A., Coleman-Derr, Devin, Lemaux, Peggy G., Taylor, John W.

Volltext

MethCP: Differentially Methylated Region Detection with Change Point Models von Gong, Boying, Purdom, Elizabeth

Volltext

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics von Gao, Cheng, Montoya, Liliam, Xu, Ling, Madera, Mary, Hollingsworth, Joy, Purdom, Elizabeth, Singan, Vasanth, Vogel, John, Hutmacher, Robert B., Dahlberg, Jeffery A., Coleman-Derr, Devin, Lemaux, Peggy G., Taylor, John W.

Volltext

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics von Xu, Ling, Dong, Zhaobin, Chiniquy, Dawn, Pierroz, Grady, Deng, Siwen, Gao, Cheng, Diamond, Spencer, Simmons, Tuesday, Wipf, Heidi M.-L., Caddell, Daniel, Varoquaux, Nelle, Madera, Mary A., Hutmacher, Robert, Deutschbauer, Adam, Dahlberg, Jeffery A., Guerinot, Mary Lou, Purdom, Elizabeth, Banfield, Jillian F., Taylor, John W., Lemaux, Peggy G., Coleman-Derr, Devin

Volltext

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia von Brann, David H, Tsukahara, Tatsuya, Weinreb, Caleb, Lipovsek, Marcela, Van den Berge, Koen, Gong, Boying, Chance, Rebecca, Macaulay, Iain C, Chou, Hsin-Jung, Fletcher, Russell B, Das, Diya, Street, Kelly, de Bezieux, Hector Roux, Choi, Yoon-Gi, Risso, Davide, Dudoit, Sandrine, Purdom, Elizabeth, Mill, Jonathan, Hachem, Ralph Abi, Matsunami, Hiroaki, Logan, Darren W, Goldstein, Bradley J, Grubb, Matthew S, Ngai, John, Datta, Sandeep Robert

Volltext

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution von Fletcher, Russell B., Das, Diya, Gadye, Levi, Street, Kelly N., Baudhuin, Ariane, Wagner, Allon, Cole, Michael B., Flores, Quetzal, Choi, Yoon Gi, Yosef, Nir, Purdom, Elizabeth, Dudoit, Sandrine, Risso, Davide, Ngai, John

Volltext

Diversity of the Human Intestinal Microbial Flora von Eckburg, Paul B, Bik, Elisabeth M, Bernstein, Charles N, Purdom, Elizabeth, Dethlefsen, Les, Sargent, Michael, Gill, Steven R, Nelson, Karen E, Relman, David A

Volltext

ANALYSIS OF A DATA MATRIX AND A GRAPH: METAGENOMIC DATA AND THE PHYLOGENETIC TREE von Purdom, Elizabeth

Volltext

Strong succession in arbuscular mycorrhizal fungal communities von Gao, Cheng, Montoya, Liliam, Xu, Ling, Madera, Mary, Hollingsworth, Joy, Purdom, Elizabeth, Hutmacher, Robert B., Dahlberg, Jeffery A., Coleman-Derr, Devin, Lemaux, Peggy G., Taylor, John W.

Volltext

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses von Varoquaux, Nelle, Cole, Benjamin, Gao, Cheng, Pierroz, Grady, Baker, Christopher R., Patel, Dhruv, Madera, Mary, Jeffers, Tim, Hollingsworth, Joy, Sievert, Julie, Yoshinaga, Yuko, Owiti, Judith A., Singan, Vasanth R., DeGraaf, Stephanie, Xu, Ling, Blow, Matthew J., Harrison, Maria J., Visel, Axel, Jansson, Christer, Niyogi, Krishna K., Hutmacher, Robert, Coleman-Derr, Devin, O’Malley, Ronan C., Taylor, John W., Dahlberg, Jeffery, Vogel, John P., Lemaux, Peggy G., Purdom, Elizabeth

Volltext

mbkmeans: Fast clustering for single cell data using mini-batch k-means von Hicks, Stephanie C, Liu, Ruoxi, Ni, Yuwei, Purdom, Elizabeth, Risso, Davide

Volltext

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq von Cole, Michael B., Risso, Davide, Wagner, Allon, DeTomaso, David, Ngai, John, Purdom, Elizabeth, Dudoit, Sandrine, Yosef, Nir

Volltext

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution von Cheng, Jeffrey B., Sedgewick, Andrew J., Finnegan, Alex I., Harirchian, Paymann, Lee, Jerry, Kwon, Sunjong, Fassett, Marlys S., Golovato, Justin, Gray, Matthew, Ghadially, Ruby, Liao, Wilson, Perez White, Bethany E., Mauro, Theodora M., Mully, Thaddeus, Kim, Esther A., Sbitany, Hani, Neuhaus, Isaac M., Grekin, Roy C., Yu, Siegrid S., Gray, Joe W., Purdom, Elizabeth, Paus, Ralf, Vaske, Charles J., Benz, Stephen C., Song, Jun S., Cho, Raymond J.

Volltext

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1 von Verhaak, Roel G.W., Hoadley, Katherine A., Purdom, Elizabeth, Wang, Victoria, Qi, Yuan, Wilkerson, Matthew D., Miller, C. Ryan, Ding, Li, Golub, Todd, Mesirov, Jill P., Alexe, Gabriele, Lawrence, Michael, O'Kelly, Michael, Tamayo, Pablo, Weir, Barbara A., Gabriel, Stacey, Winckler, Wendy, Gupta, Supriya, Jakkula, Lakshmi, Feiler, Heidi S., Hodgson, J. Graeme, James, C. David, Sarkaria, Jann N., Brennan, Cameron, Kahn, Ari, Spellman, Paul T., Wilson, Richard K., Speed, Terence P., Gray, Joe W., Meyerson, Matthew, Getz, Gad, Perou, Charles M., Hayes, D. Neil

Volltext