Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants von Hassa, Julia, Maus, Irena, Off, Sandra, Pühler, Alfred, Scherer, Paul, Klocke, Michael, Schlüter, Andreas

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Complete genome sequence of the novel Porphyromonadaceae bacterium strain ING2-E5B isolated from a mesophilic lab-scale biogas reactor von Hahnke, Sarah, Maus, Irena, Wibberg, Daniel, Tomazetto, Geizecler, Pühler, Alfred, Klocke, Michael, Schlüter, Andreas

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Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation von Hanreich, Angelika, Schimpf, Ulrike, Zakrzewski, Martha, Schlüter, Andreas, Benndorf, Dirk, Heyer, Robert, Rapp, Erdmann, Pühler, Alfred, Reichl, Udo, Klocke, Michael

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Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes von Wibberg, Daniel, Andersson, Louise, Tzelepis, Georgios, Rupp, Oliver, Blom, Jochen, Jelonek, Lukas, Pühler, Alfred, Fogelqvist, Johan, Varrelmann, Mark, Schlüter, Andreas, Dixelius, Christina

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Anaeropeptidivorans aminofermentans gen. nov., sp. nov., a mesophilic proteolytic salt-tolerant bacterium isolated from a laboratory-scale biogas fermenter, and emended description... von Köller, Nora, Hahnke, Sarah, Zverlov, Vladimir, Wibberg, Daniel, Klingl, Andreas, Busche, Tobias, Klocke, Michael, Pühler, Alfred, Schlüter, Andreas, Liebl, Wolfgang, Maus, Irena

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Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats von Salto, Ileana P., Torres Tejerizo, Gonzalo, Wibberg, Daniel, Pühler, Alfred, Schlüter, Andreas, Pistorio, Mariano

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Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene von Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Bontron, Séverine, Sczyrba, Alexander, Nordmann, Patrice, Pühler, Alfred, Poirel, Laurent, Schlüter, Andreas

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A maltose-regulated large genomic region is activated by the transcriptional regulator MalT inActinoplanessp. SE50/110 von Droste, Julian, Kulisch, Martin, Wolf, Timo, Schaffert, Lena, Schneiker-Bekel, Susanne, Puehler, Alfred, Kalinowski, Joern

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Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing von Kröber, Magdalena, Verwaaijen, Bart, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas

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Genome-based microbiology—From -omics research to systems and synthetic biology von Pühler, Alfred

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Two Flagellar mutants of Xanthomonas campestris are characterized by enhanced xanthan production and higher xanthan viscosity von Steffens, Tim, Vorhölter, Frank-Jörg, Teckentrup, Julia, Hublik, Gerd, Walhorn, Volker, Anselmetti, Dario, Pühler, Alfred, Niehaus, Karsten, Ortseifen, Vera

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Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV von Bartholomäus, Anika, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas, Varrelmann, Mark

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Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibio... von Szczepanowski, Rafael, Linke, Burkhard, Krahn, Irene, Gartemann, Karl-Heinz, Gutzkow, Tim, Eichler, Wolfgang, Puhler, Alfred, Schluter, Andreas

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The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase von Droste, Julian, Ortseifen, Vera, Schaffert, Lena, Persicke, Marcus, Schneiker-Bekel, Susanne, Puehler, Alfred, Kalinowski, Joern

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EDGAR: a software framework for the comparative analysis of prokaryotic genomes von Blom, Jochen, Albaum, Stefan P, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, Goesmann, Alexander

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Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes von Nelkner, Johanna, Henke, Christian, Lin, Timo Wentong, Pätzold, Wiebke, Hassa, Julia, Jaenicke, Sebastian, Grosch, Rita, Pühler, Alfred, Sczyrba, Alexander, Schlüter, Andreas

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Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032 von Mentz, Almut, Neshat, Armin, Pfeifer-Sancar, Katharina, Pühler, Alfred, Rückert, Christian, Kalinowski, Jörn

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Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing von Zakrzewski, Martha, Goesmann, Alexander, Jaenicke, Sebastian, Jünemann, Sebastian, Eikmeyer, Felix, Szczepanowski, Rafael, Al-Soud, Waleed Abu, Sørensen, Søren, Pühler, Alfred, Schlüter, Andreas

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Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes von Liebe, Sebastian, Wibberg, Daniel, Winkler, Anika, Pühler, Alfred, Schlüter, Andreas, Varrelmann, Mark

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Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool von Schlüter, Andreas, Szczepanowski, Rafael, Pühler, Alfred, Top, Eva M

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