Hierarchical annotation of eQTLs by H-eQTL enables identification of genes with cell type-divergent regulation von Przytycki, Pawel F, Pollard, Katherine S

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CellWalker integrates single-cell and bulk data to resolve regulatory elements across cell types in complex tissues von Przytycki, Pawel F, Pollard, Katherine S

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A transcriptional switch governs fibroblast activation in heart disease von Alexanian, Michael, Przytycki, Pawel F., Micheletti, Rudi, Padmanabhan, Arun, Ye, Lin, Travers, Joshua G., Gonzalez-Teran, Barbara, Silva, Ana Catarina, Duan, Qiming, Ranade, Sanjeev S., Felix, Franco, Linares-Saldana, Ricardo, Li, Li, Lee, Clara Youngna, Sadagopan, Nandhini, Pelonero, Angelo, Huang, Yu, Andreoletti, Gaia, Jain, Rajan, McKinsey, Timothy A., Rosenfeld, Michael G., Gifford, Casey A., Pollard, Katherine S., Haldar, Saptarsi M., Srivastava, Deepak

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Differential analysis between somatic mutation and germline variation profiles reveals cancer-related genes von Przytycki, Pawel F, Singh, Mona

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Correction to: Differential analysis between somatic mutation and germline variation profiles reveals cancer-related genes von Przytycki, Pawel F, Singh, Mona

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Single-cell epigenomics reveals mechanisms of human cortical development von Ziffra, Ryan S., Kim, Chang N., Ross, Jayden M., Wilfert, Amy, Turner, Tychele N., Haeussler, Maximilian, Casella, Alex M., Przytycki, Pawel F., Keough, Kathleen C., Shin, David, Bogdanoff, Derek, Kreimer, Anat, Pollard, Katherine S., Ament, Seth A., Eichler, Evan E., Ahituv, Nadav, Nowakowski, Tomasz J.

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SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks von Zheng, Jie, Zhang, David, Przytycki, Pawel F., Zielinski, Rafal, Capala, Jacek, Przytycka, Teresa M.

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CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements von Przytycki, Pawel F, Pollard, Katherine S

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Uncovering the genetic circuits that drive diseases von Przytycki, Pawel F

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Differential Allele-Specific Expression Uncovers Breast Cancer Genes Dysregulated by Cis Noncoding Mutations von Przytycki, Pawel F., Singh, Mona

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Chromatin remodelling drives immune cell–fibroblast communication in heart failure von Alexanian, Michael, Padmanabhan, Arun, Nishino, Tomohiro, Travers, Joshua G., Ye, Lin, Pelonero, Angelo, Lee, Clara Youngna, Sadagopan, Nandhini, Huang, Yu, Auclair, Kirsten, Zhu, Ada, An, Yuqian, Ekstrand, Christina A., Martinez, Cassandra, Teran, Barbara Gonzalez, Flanigan, Will R., Kim, Charis Kee-Seon, Lumbao-Conradson, Koya, Gardner, Zachary, Li, Li, Costa, Mauro W., Jain, Rajan, Charo, Israel, Combes, Alexis J., Haldar, Saptarsi M., Pollard, Katherine S., Vagnozzi, Ronald J., McKinsey, Timothy A., Przytycki, Pawel F., Srivastava, Deepak

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Massively parallel characterization of regulatory elements in the developing human cortex von Deng, Chengyu, Whalen, Sean, Steyert, Marilyn, Ziffra, Ryan, Przytycki, Pawel F, Inoue, Fumitaka, Pereira, Daniela A, Capauto, Davide, Norton, Scott, Vaccarino, Flora M, Pollen, Alex A, Nowakowski, Tomasz J, Ahituv, Nadav, Pollard, Katherine S

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The crosstalk between EGF, IGF, and Insulin cell signaling pathways--computational and experimental analysis von Zielinski, Rafal, Przytycki, Pawel F, Zheng, Jie, Zhang, David, Przytycka, Teresa M, Capala, Jacek

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Cell Layers: uncovering clustering structure in unsupervised single-cell transcriptomic analysis von Blair, Andrew P, Hu, Robert K, Farah, Elie N, Chi, Neil C, Pollard, Katherine S, Przytycki, Pawel F, Kathiriya, Irfan S, Bruneau, Benoit G

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Three-dimensional genome rewiring in loci with human accelerated regions von Keough, Kathleen C, Whalen, Sean, Inoue, Fumitaka, Przytycki, Pawel F, Fair, Tyler, Deng, Chengyu, Steyert, Marilyn, Ryu, Hane, Lindblad-Toh, Kerstin, Karlsson, Elinor, Nowakowski, Tomasz, Ahituv, Nadav, Pollen, Alex, Pollard, Katherine S

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Single-cell genomics and regulatory networks for 388 human brains von Emani, Prashant S, Liu, Jason J, Clarke, Declan, Jensen, Matthew, Warrell, Jonathan, Gupta, Chirag, Meng, Ran, Lee, Che Yu, Xu, Siwei, Dursun, Cagatay, Lou, Shaoke, Chen, Yuhang, Chu, Zhiyuan, Galeev, Timur, Hwang, Ahyeon, Li, Yunyang, Ni, Pengyu, Zhou, Xiao, Bakken, Trygve E, Bendl, Jaroslav, Bicks, Lucy, Chatterjee, Tanima, Cheng, Lijun, Cheng, Yuyan, Dai, Yi, Duan, Ziheng, Flaherty, Mary, Fullard, John F, Gancz, Michael, Garrido-Martín, Diego, Gaynor-Gillett, Sophia, Grundman, Jennifer, Hawken, Natalie, Henry, Ella, Hoffman, Gabriel E, Huang, Ao, Jiang, Yunzhe, Jin, Ting, Jorstad, Nikolas L, Kawaguchi, Riki, Khullar, Saniya, Liu, Jianyin, Liu, Junhao, Liu, Shuang, Ma, Shaojie, Margolis, Michael, Mazariegos, Samantha, Moore, Jill, Moran, Jennifer R, Nguyen, Eric, Phalke, Nishigandha, Pjanic, Milos, Pratt, Henry, Quintero, Diana, Rajagopalan, Ananya S, Riesenmy, Tiernon R, Shedd, Nicole, Shi, Manman, Spector, Megan, Terwilliger, Rosemarie, Travaglini, Kyle J, Wamsley, Brie, Wang, Gaoyuan, Xia, Yan, Xiao, Shaohua, Yang, Andrew C, Zheng, Suchen, Gandal, Michael J, Lee, Donghoon, Lein, Ed S, Roussos, Panos, Sestan, Nenad, Weng, Zhiping, White, Kevin P, Won, Hyejung, Girgenti, Matthew J, Zhang, Jing, Wang, Daifeng, Geschwind, Daniel, Gerstein, Mark

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Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain von Wen, Cindy, Margolis, Michael, Dai, Rujia, Zhang, Pan, Przytycki, Pawel F, Vo, Daniel D, Bhattacharya, Arjun, Matoba, Nana, Tang, Miao, Jiao, Chuan, Kim, Minsoo, Tsai, Ellen, Hoh, Celine, Aygün, Nil, Walker, Rebecca L, Chatzinakos, Christos, Clarke, Declan, Pratt, Henry, Peters, Mette A, Gerstein, Mark, Daskalakis, Nikolaos P, Weng, Zhiping, Jaffe, Andrew E, Kleinman, Joel E, Hyde, Thomas M, Weinberger, Daniel R, Bray, Nicholas J, Sestan, Nenad, Geschwind, Daniel H, Roeder, Kathryn, Gusev, Alexander, Pasaniuc, Bogdan, Stein, Jason L, Love, Michael I, Pollard, Katherine S, Liu, Chunyu, Gandal, Michael J

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22. LARGE-SCALE, MULTI-ETHNIC RESOURCE OF GENE, ISOFORM, AND SPLICING REGULATION IN THE DEVELOPING HUMAN BRAIN von Wen, Cindy, Dai, Rujia, Przytycki, Pawel F., Kim, Minsoo, Bhattacharya, Arjun, Zhang, Pan, Walker, Rebecca L., Pinto, Dalila, Pollard, Katherine S., Liu, Chunyu, Gandal, Michael J.

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SimBooINet-a Cytoscape plugin for dynamic simulation of signaling networks von JIE ZHENG, DAVID ZHANG, PRZYTYCKI, Pawel F, ZIELINSKI, Rafal, CAPALA, Jacek, PRZYTYCKA, Teresa M

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Additional file 2 of Hierarchical annotation of eQTLs by H-eQTL enables identification of genes with cell type-divergent regulation von Przytycki, Pawel F., Pollard, Katherine S.

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