The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences von Perez-Riverol, Yasset, Bai, Jingwen, Bandla, Chakradhar, García-Seisdedos, David, Hewapathirana, Suresh, Kamatchinathan, Selvakumar, Kundu, Deepti J, Prakash, Ananth, Frericks-Zipper, Anika, Eisenacher, Martin, Walzer, Mathias, Wang, Shengbo, Brazma, Alvis, Vizcaíno, Juan Antonio

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The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest von Trendel, Jakob, Schwarzl, Thomas, Horos, Rastislav, Prakash, Ananth, Bateman, Alex, Hentze, Matthias W., Krijgsveld, Jeroen

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Expression Atlas update: gene and protein expression in multiple species von Moreno, Pablo, Fexova, Silvie, George, Nancy, Manning, Jonathan R, Miao, Zhichiao, Mohammed, Suhaib, Muñoz-Pomer, Alfonso, Fullgrabe, Anja, Bi, Yalan, Bush, Natassja, Iqbal, Haider, Kumbham, Upendra, Solovyev, Andrey, Zhao, Lingyun, Prakash, Ananth, García-Seisdedos, David, Kundu, Deepti J, Wang, Shengbo, Walzer, Mathias, Clarke, Laura, Osumi-Sutherland, David, Tello-Ruiz, Marcela Karey, Kumari, Sunita, Ware, Doreen, Eliasova, Jana, Arends, Mark J, Nawijn, Martijn C, Meyer, Kerstin, Burdett, Tony, Marioni, John, Teichmann, Sarah, Vizcaíno, Juan Antonio, Brazma, Alvis, Papatheodorou, Irene

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Integrated meta-analysis of colorectal cancer public proteomic datasets for biomarker discovery and validation von Robles, Javier, Prakash, Ananth, Vizcaíno, Juan Antonio, Casal, J Ignacio

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Integrated View of Baseline Protein Expression in Human Tissues von Prakash, Ananth, García-Seisdedos, David, Wang, Shengbo, Kundu, Deepti Jaiswal, Collins, Andrew, George, Nancy, Moreno, Pablo, Papatheodorou, Irene, Jones, Andrew R., Vizcaíno, Juan Antonio

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Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues von Wang, Shengbo, García-Seisdedos, David, Prakash, Ananth, Kundu, Deepti Jaiswal, Collins, Andrew, George, Nancy, Fexova, Silvie, Moreno, Pablo, Papatheodorou, Irene, Jones, Andrew R, Vizcaíno, Juan Antonio

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Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity von Thomas, David C, Clare, Simon, Sowerby, John M, Pardo, Mercedes, Juss, Jatinder K, Goulding, David A, van der Weyden, Louise, Storisteanu, Daniel, Prakash, Ananth, Espéli, Marion, Flint, Shaun, Lee, James C, Hoenderdos, Kim, Kane, Leanne, Harcourt, Katherine, Mukhopadhyay, Subhankar, Umrania, Yagnesh, Antrobus, Robin, Nathan, James A, Adams, David J, Bateman, Alex, Choudhary, Jyoti S, Lyons, Paul A, Condliffe, Alison M, Chilvers, Edwin R, Dougan, Gordon, Smith, Kenneth G C

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Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas von Walzer, Mathias, García-Seisdedos, David, Prakash, Ananth, Brack, Paul, Crowther, Peter, Graham, Robert L., George, Nancy, Mohammed, Suhaib, Moreno, Pablo, Papatheodorou, Irene, Hubbard, Simon J., Vizcaíno, Juan Antonio

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Protein domain of unknown function 3233 is a translocation domain of autotransporter secretory mechanism in gamma proteobacteria von Prakash, Ananth, Yogeeshwari, S, Sircar, Sanchari, Agrawal, Shipra

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Domain atrophy creates rare cases of functional partial protein domains von Prakash, Ananth, Bateman, Alex

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Role of Eros, a novel transmembrane protein, in regulation of host defence von Thomas, David C, Dr, Clare, Simon, PhD, Sowerby, John M, PhD, Pardo, Mercedes, PhD, Juss, Jatinder K, MRCP, Goulding, David A, PhD, Van der Weyden, Louise, PhD, Storisteanu, Daniel M L, PhD, Prakash, Ananth, BSc, Espeli, Marion, PhD, Flint, Shaun, MRCP, Lee, James C, MRCP, Hoenderdos, Kim, PhD, Kane, Leanne, BSc, Harcourt, Katherine, BSc, Mukhopadhyay, Subhankar, PhD, Umrania, Yagnesh, PhD, Antrobus, Robin, PhD, Adams, David, PhD, Bateman, Alex, PhD, Choudhary, Jyoti S, PhD, Lyons, Paul A, PhD, Condliffe, Alison M, Prof, Chilvers, Edwin R, Prof, Dougan, Gordon, Prof, Smith, Kenneth G C, Prof

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The HMMER Web Server for Protein Sequence Similarity Search von Prakash, Ananth, Jeffryes, Matt, Bateman, Alex, Finn, Robert D.

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The yeast noncoding RNA interaction network von Panni, Simona, Prakash, Ananth, Bateman, Alex, Orchard, Sandra

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Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues von Wang, Shengbo, Collins, Andrew, Prakash, Ananth, Fexova, Silvie, Papatheodorou, Irene, Jones, Andrew R., Vizcaíno, Juan Antonio

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The PRIDE database at 20 years: 2025 update von Perez-Riverol, Yasset, Bandla, Chakradhar, Kundu, Deepti J, Kamatchinathan, Selvakumar, Bai, Jingwen, Hewapathirana, Suresh, John, Nithu Sara, Prakash, Ananth, Walzer, Mathias, Wang, Shengbo, Vizcaíno, Juan Antonio

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Method for Independent Estimation of the False Localization Rate for Phosphoproteomics von Ramsbottom, Kerry A., Prakash, Ananth, Riverol, Yasset Perez, Camacho, Oscar Martin, Martin, Maria-Jesus, Vizcaíno, Juan Antonio, Deutsch, Eric W., Jones, Andrew R.

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Simona Panni|Ananth Prakash|Alex Bateman|and Sandra Orchard von Panni, Simona, Prakash, Ananth, Bateman, Alex, Orchard, Sandra

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An innate twist between Crick's wobble and Watson-Crick base pairs von Ananth, Prakash, Goldsmith, Gunaseelan, Yathindra, Narayanarao

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Phosphorylation in the Plasmodium falciparum Proteome: A Meta-Analysis of Publicly Available Data Sets von Camacho, Oscar J M, Ramsbottom, Kerry A, Prakash, Ananth, Sun, Zhi, Perez Riverol, Yasset, Bowler-Barnett, Emily, Martin, Maria, Fan, Jun, Deutsch, Eric W, Vizcaíno, Juan Antonio, Jones, Andrew R

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Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome von Ramsbottom, Kerry A., Prakash, Ananth, Perez-Riverol, Yasset, Camacho, Oscar Martin, Sun, Zhi, Kundu, Deepti J., Bowler-Barnett, Emily, Martin, Maria, Fan, Jun, Chebotarov, Dmytro, McNally, Kenneth L., Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R.

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