Copy number alterations assessed at the single-cell level revealed mono- and polyclonal seeding patterns of distant metastasis in a small-cell lung cancer patient von Ferronika, P., van den Bos, H., Taudt, A., Spierings, D.C.J., Saber, A., Hiltermann, T.J.N., Kok, K., Porubsky, D., van der Wekken, A.J., Timens, W., Foijer, F., Colomé-Tatché, M., Groen, H.J.M., Lansdorp, P.M., van den Berg, A.

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Lymphoscintigraphy Using Tilmanocept Detects Multiple Sentinel Lymph Nodes in Melanoma Patients von Balkin, Daniel M., Tranah, Gregory J., Wang, Frederick, O’Donoghue, Cristina, Morell, Emily A., Porubsky, Caitlin, Nosrati, Mehdi, Vaquero, Edith M., Kim, HanKyul, Carr, Michael J., Montilla-Soler, Jaime L., Wu, Max C., Torre, Donald M., Kashani-Sabet, Mohammed, Zager, Jonathan S., Leong, Stanley P.

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Sister chromatid exchanges induced by perturbed replication can form independently of BRCA1, BRCA2 and RAD51 von Heijink, A.M., Stok, C., Porubsky, D., Manolika, E.M., Kanter, J.K. de, Kok, Y.P., Everts, M., Boer, H.R. de, Audrey, A., Bakker, F.J., Wierenga, E., Tijsterman, M., Guryev, V., Spierings, D.C.J., Knipscheer, P., Boxtel, R. van, Chaudhuri, A.R., Lansdorp, P.M., Vugt, M.A.T.M. van

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Traumatic Pericardial Rupture With Cardiac Herniation von Lindenmann, Joerg, MD, Matzi, Veronika, MD, Neuboeck, Nicole, MD, Porubsky, Christian, MD, Ratzenhofer, Beatrice, MD, Maier, Alfred, MD, Smolle-Juettner, Freyja-Maria, MD

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Self-Expandable Covered Metal Tracheal Type Stent for Sealing Cervical Anastomotic Leak After Esophagectomy and Gastric Pull-Up: Pitfalls and Possibilities von Lindenmann, Joerg, MD, Matzi, Veronika, MD, Porubsky, Christian, MD, Anegg, Udo, MD, Sankin, Oliver, MD, Gabor, Sabine, MD, Neuboeck, Nicole, MD, Maier, Alfred, MD, Smolle-Juettner, Freyja Maria, MD

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Intrathoracic Insertion of the VAC Device in a Case of Pleural Empyema 20 Years After Pneumonectomy von Matzi, Veronika, MD, Lindenmann, Joerg, MD, Porubsky, Christian, MD, Neuboeck, Nicole, MD, Maier, Alfred, MD, Smolle-Juettner, Freyja Maria, MD

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Copy number alterations assessed at the single-cell level revealed mono- and polyclonal seeding patterns of distant metastasis in a small-cell lung cancer patient von Ferronika, P, van den Bos, H, Taudt, A, Spierings, D C J, Saber, A, Hiltermann, T J N, Kok, K, Porubsky, D, van der Wekken, A J, Timens, W, Foijer, F, Colomé-Tatché, M, Groen, H J M, Lansdorp, P M, van den Berg, A

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Deep learning for diagnosis and survival prediction in soft tissue sarcoma von Foersch, S., Eckstein, M., Wagner, D.-C., Gach, F., Woerl, A.-C., Geiger, J., Glasner, C., Schelbert, S., Schulz, S., Porubsky, S., Kreft, A., Hartmann, A., Agaimy, A., Roth, W.

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Inversion polymorphism in a complete human genome assembly von Porubsky, David, Harvey, William T, Rozanski, Allison N, Ebler, Jana, Höps, Wolfram, Ashraf, Hufsah, Hasenfeld, Patrick, Paten, Benedict, Sanders, Ashley D, Marschall, Tobias, Korbel, Jan O, Eichler, Evan E

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The 2021 WHO Classification of Tumors of the Thymus and Mediastinum: What Is New in Thymic Epithelial, Germ Cell, and Mesenchymal Tumors? von Marx, Alexander, Chan, John K.C., Chalabreysse, Lara, Dacic, Sanja, Detterbeck, Frank, French, Christopher A., Hornick, Jason L., Inagaki, Hiroshi, Jain, Deepali, Lazar, Alexander J., Marino, Mirella, Marom, Edith M., Moreira, Andre L., Nicholson, Andrew G., Noguchi, Masayuki, Nonaka, Daisuke, Papotti, Mauro G., Porubsky, Stefan, Sholl, Lynette M., Tateyama, Hisashi, Thomas de Montpréville, Vincent, Travis, William D., Rajan, Arun, Roden, Anja C., Ströbel, Philipp

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Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C von Kronenberg, Zev N., Rhie, Arang, Koren, Sergey, Concepcion, Gregory T., Peluso, Paul, Munson, Katherine M., Porubsky, David, Kuhn, Kristen, Mueller, Kathryn A., Low, Wai Yee, Hiendleder, Stefan, Fedrigo, Olivier, Liachko, Ivan, Hall, Richard J., Phillippy, Adam M., Eichler, Evan E., Williams, John L., Smith, Timothy P. L., Jarvis, Erich D., Sullivan, Shawn T., Kingan, Sarah B.

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Dense and accurate whole-chromosome haplotyping of individual genomes von Porubsky, David, Garg, Shilpa, Sanders, Ashley D., Korbel, Jan O., Guryev, Victor, Lansdorp, Peter M., Marschall, Tobias

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Gaps and complex structurally variant loci in phased genome assemblies von Porubsky, David, Vollger, Mitchell R, Harvey, William T, Rozanski, Allison N, Ebert, Peter, Hickey, Glenn, Hasenfeld, Patrick, Sanders, Ashley D, Stober, Catherine, Korbel, Jan O, Paten, Benedict, Marschall, Tobias, Eichler, Evan E

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Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads von Vollger, Mitchell R., Logsdon, Glennis A., Audano, Peter A., Sulovari, Arvis, Porubsky, David, Peluso, Paul, Wenger, Aaron M., Concepcion, Gregory T., Kronenberg, Zev N., Munson, Katherine M., Baker, Carl, Sanders, Ashley D., Spierings, Diana C.J., Lansdorp, Peter M., Surti, Urvashi, Hunkapiller, Michael W., Eichler, Evan E.

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The Developmental Potential of iPSCs Is Greatly Influenced by Reprogramming Factor Selection von Buganim, Yosef, Markoulaki, Styliani, van Wietmarschen, Niek, Hoke, Heather, Wu, Tao, Ganz, Kibibi, Akhtar-Zaidi, Batool, He, Yupeng, Abraham, Brian J., Porubsky, David, Kulenkampff, Elisabeth, Faddah, Dina A., Shi, Linyu, Gao, Qing, Sarkar, Sovan, Cohen, Malkiel, Goldmann, Johanna, Nery, Joseph R., Schultz, Matthew D., Ecker, Joseph R., Xiao, Andrew, Young, Richard A., Lansdorp, Peter M., Jaenisch, Rudolf

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Structure of the Human Lung Cytochrome P450 2A13 von Smith, Brian D., Sanders, Jason L., Porubsky, Patrick R., Lushington, Gerald H., Stout, C. David, Scott, Emily E.

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Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads von Porubsky, David, Ebert, Peter, Audano, Peter A., Vollger, Mitchell R., Harvey, William T., Marijon, Pierre, Ebler, Jana, Munson, Katherine M., Sorensen, Melanie, Sulovari, Arvis, Haukness, Marina, Ghareghani, Maryam, Lansdorp, Peter M., Paten, Benedict, Devine, Scott E., Sanders, Ashley D., Lee, Charles, Chaisson, Mark J. P., Korbel, Jan O., Eichler, Evan E., Marschall, Tobias

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Computational pan-genomics: status, promises and challenges von Marschall, Tobias, Marz, Manja, Abeel, Thomas, Dijkstra, Louis, Dutilh, Bas E, Ghaffaari, Ali, Kersey, Paul, Kloosterman, Wigard P, Mäkinen, Veli, Novak, Adam M, Paten, Benedict, Porubsky, David, Rivals, Eric, Alkan, Can, Baaijens, Jasmijn A, Paul I W De Bakker, Boeva, Valentina, Bonnal, Raoul J P, Chiaromonte, Francesca, Chikhi, Rayan, Ciccarelli, Francesca D, Cijvat, Robin, Datema, Erwin, Van Duijn, Cornelia M, Eichler, Evan E, Ernst, Corinna, Eskin, Eleazar, Garrison, Erik, El-Kebir, Mohammed, Klau, Gunnar W, Korbel, Jan O, Eric-Wubbo Lameijer, Langmead, Benjamin, Martin, Marcel, Medvedev, Paul, Mu, John C, Neerincx, Pieter, Ouwens, Klaasjan, Peterlongo, Pierre, Pisanti, Nadia, Rahmann, Sven, Raphael, Ben, Reinert, Knut, de Ridder, Dick, de Ridder, Jeroen, Schlesner, Matthias, Schulz-Trieglaff, Ole, Sanders, Ashley D, Sheikhizadeh, Siavash, Shneider, Carl, Smit, Sandra, Valenzuela, Daniel, Wang, Jiayin, Wessels, Lodewyk, Zhang, Ying, Guryev, Victor, Vandin, Fabio, Ye, Kai, Schönhuth, Alexander

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breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data von Porubsky, David, Sanders, Ashley D, Taudt, Aaron, Colomé-Tatché, Maria, Lansdorp, Peter M, Guryev, Victor

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Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders von Porubsky, David, Höps, Wolfram, Ashraf, Hufsah, Hsieh, PingHsun, Rodriguez-Martin, Bernardo, Yilmaz, Feyza, Ebler, Jana, Hallast, Pille, Maria Maggiolini, Flavia Angela, Harvey, William T., Henning, Barbara, Audano, Peter A., Gordon, David S., Ebert, Peter, Hasenfeld, Patrick, Benito, Eva, Zhu, Qihui, Lee, Charles, Antonacci, Francesca, Steinrücken, Matthias, Beck, Christine R., Sanders, Ashley D., Marschall, Tobias, Eichler, Evan E., Korbel, Jan O.

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