Adaptive laboratory evolution — harnessing the power of biology for metabolic engineering von Portnoy, Vasiliy A, Bezdan, Daniela, Zengler, Karsten

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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Deletion of Genes Encoding Cytochrome Oxidases and Quinol Monooxygenase Blocks the Aerobic-Anaerobic Shift in Escherichia coli K-12 MG1655 von Portnoy, Vasiliy A, Scott, David A, Lewis, Nathan E, Tarasova, Yekaterina, Osterman, Andrei L, Palsson, Bernhard Ø

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Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima von Rodionov, Dmitry A, Rodionova, Irina A, Li, Xiaoqing, Ravcheev, Dmitry A, Tarasova, Yekaterina, Portnoy, Vasiliy A, Zengler, Karsten, Osterman, Andrei L

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Aerobic Fermentation of d-Glucose by an Evolved Cytochrome Oxidase-Deficient Escherichia coli Strain von PORTNOY, Vasiliy A, HERRGARD, Markus J, PALSSON, Bernhard O

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In silico method for modelling metabolism and gene product expression at genome scale von Lerman, Joshua A., Hyduke, Daniel R., Latif, Haythem, Portnoy, Vasiliy A., Lewis, Nathan E., Orth, Jeffrey D., Schrimpe-Rutledge, Alexandra C., Smith, Richard D., Adkins, Joshua N., Zengler, Karsten, Palsson, Bernhard O.

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Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network von Latif, Haythem, Sahin, Merve, Tarasova, Janna, Tarasova, Yekaterina, Portnoy, Vasiliy A, Nogales, Juan, Zengler, Karsten

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The Genome Organization of Thermotoga maritima Reflects Its Lifestyle: e1003485 von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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Escherichia coli metabolic engineering oxygen independent platform strains and methods of use thereof von PALSSON BERNHARD, PORTNOY VASILIY A

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ESCHERICHIA COLI METABOLIC ENGINEERING OXYGEN INDEPENDENT PLATFORM STRAINS AND METHODS OF USE THEREOF von PALSSON BERNHARD, PORTNOY VASILIY A

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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The genome organization of Thermotoga maritima reflects its lifestyle von Latif, Haythem, Lerman, Joshua A, Portnoy, Vasiliy A, Tarasova, Yekaterina, Nagarajan, Harish, Schrimpe-Rutledge, Alexandra C, Smith, Richard D, Adkins, Joshua N, Lee, Dae-Hee, Qiu, Yu, Zengler, Karsten

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Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae von Herrgård, Markus J, Lee, Baek-Seok, Portnoy, Vasiliy, Palsson, Bernhard Ø

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The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes von Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika

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Systematic condition-dependent annotation of metabolic genes von Shlomi, Tomer, Herrgard, Markus, Portnoy, Vasiliy, Naim, Efrat, Palsson, Bernhard Ø, Sharan, Roded, Ruppin, Eytan

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Predicting outcomes of steady-state .sup.13.sup.C isotope tracing experiments using Monte Carlo sampling von Schellenberger, Jan, Zielinski, Daniel C, Choi, Wing, Madireddi, Sunthosh, Portnoy, Vasiliy, Scott, David A, Reed, Jennifer L, Osterman, Andrei L, Palsson, Bernhard ?

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Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling von Schellenberger, Jan, Zielinski, Daniel C, Choi, Wing, Madireddi, Sunthosh, Portnoy, Vasiliy, Scott, David A, Reed, Jennifer L, Osterman, Andrei L, Palsson, Bernhard

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Predicting outcomes of steady-state 13 C isotope tracing experiments using Monte Carlo samplingSynthetic biology von Schellenberger, Jan, Zielinski, Daniel C, Choi, Wing, Madireddi, Sunthosh, Portnoy, Vasiliy, Scott, David A, Reed, Jennifer L, Osterman, Andrei L, Palsson, Bernhard O

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