Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology von Delport, Wayne, Poon, Art F. Y., Frost, Simon D. W., Kosakovsky Pond, Sergei L.

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Ancestral Reconstruction von Joy, Jeffrey B, Liang, Richard H, McCloskey, Rosemary M, Nguyen, T, Poon, Art F Y

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Optimized phylogenetic clustering of HIV-1 sequence data for public health applications von Chato, Connor, Feng, Yi, Ruan, Yuhua, Xing, Hui, Herbeck, Joshua, Kalish, Marcia, Poon, Art F Y

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Molecular source attribution von Chao, Elisa, Chato, Connor, Vender, Reid, Olabode, Abayomi S, Ferreira, Roux-Cil, Poon, Art F. Y

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Opening the black box of AI‐Medicine von Poon, Aaron I F, Sung, Joseph J Y

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Allergen-Experienced Group 2 Innate Lymphoid Cells Acquire Memory-like Properties and Enhance Allergic Lung Inflammation von Martinez-Gonzalez, Itziar, Mathä, Laura, Steer, Catherine A., Ghaedi, Maryam, Poon, Grace F.T., Takei, Fumio

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Network science inspires novel tree shape statistics von Chindelevitch, Leonid, Hayati, Maryam, Poon, Art F Y, Colijn, Caroline

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Using networks to analyze and visualize the distribution of overlapping genes in virus genomes von Muñoz-Baena, Laura, Poon, Art F Y

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A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation von McCloskey, Rosemary M, Poon, Art F Y

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Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada von McLaughlin, Angela, Montoya, Vincent, Miller, Rachel L, Mordecai, Gideon J, Worobey, Michael, Poon, Art FY, Joy, Jeffrey B

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Phylodynamic Inference with Kernel ABC and Its Application to HIV Epidemiology von Poon, Art F Y

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Host defense peptide LL-37 selectively reduces proinflammatory macrophage responses von Brown, Kelly L, Poon, Grace F T, Birkenhead, Darlene, Pena, Olga M, Falsafi, Reza, Dahlgren, Claes, Karlsson, Anna, Bylund, Johan, Hancock, Robert E W, Johnson, Pauline

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HIV drug resistance testing by high-multiplex "wide" sequencing on the MiSeq instrument von Lapointe, H R, Dong, W, Lee, G Q, Bangsberg, D R, Martin, J N, Mocello, A R, Boum, Y, Karakas, A, Kirkby, D, Poon, A F Y, Harrigan, P R, Brumme, C J

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An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1 von Kosakovsky Pond, Sergei L, Posada, David, Stawiski, Eric, Chappey, Colombe, Poon, Art F Y, Hughes, Gareth, Fearnhill, Esther, Gravenor, Mike B, Leigh Brown, Andrew J, Frost, Simon D W

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Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses von Poon, Art F Y, Walker, Lorne W, Murray, Heather, McCloskey, Rosemary M, Harrigan, P Richard, Liang, Richard H

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Prospects for a sequence-based taxonomy of influenza A virus subtypes von Poon, Art F. Y

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Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study von Poon, Art F Y, Dr, Gustafson, Réka, MD, Daly, Patricia, MD, Zerr, Laura, MN, Demlow, S Ellen, MPH, Wong, Jason, MD, Woods, Conan K, BSc, Hogg, Robert S, Prof, Krajden, Mel, Prof, Moore, David, MDCM, Kendall, Perry, FRCPC, Montaner, Julio S G, Prof, Harrigan, P Richard, Prof

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An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope von Poon, Art F Y, Lewis, Fraser I, Pond, Sergei L Kosakovsky, Frost, Simon D W

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Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data von Poon, Art F Y, Swenson, Luke C, Bunnik, Evelien M, Edo-Matas, Diana, Schuitemaker, Hanneke, van 't Wout, Angélique B, Harrigan, P Richard

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Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada von Jacka, Brendan, Applegate, Tanya, Krajden, Mel, Olmstead, Andrea, Harrigan, P. Richard, Marshall, Brandon D.L., DeBeck, Kora, Milloy, M.‐J., Lamoury, Francois, Pybus, Oliver G., Lima, Viviane D., Magiorkinis, Gkikas, Montoya, Vincent, Montaner, Julio, Joy, Jeffrey, Woods, Conan, Dobrer, Sabina, Dore, Gregory J., Poon, Art F.Y., Grebely, Jason

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