Predictors of Chemosensitivity in Triple Negative Breast Cancer: An Integrated Genomic Analysis von Jiang, Tingting, Shi, Weiwei, Wali, Vikram B, Pongor, Lőrinc S, Li, Charles, Lau, Rosanna, Győrffy, Balázs, Lifton, Richard P, Symmans, William F, Pusztai, Lajos, Hatzis, Christos

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Predicting drug response of small cell lung cancer cell lines based on enrichment analysis of complex gene signatures von Nemes, Kolos, Benő, Alexandra, Topolcsányi, Petronella, Magó, Éva, Fűr, Gabriella Mihalekné, Pongor, L.őrinc S.

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Currently favored sampling practices for tumor sequencing can produce optimal results in the clinical setting von Pongor, Lőrinc S., Munkácsy, Gyöngyi, Vereczkey, Ildikó, Pete, Imre, Győrffy, Balázs

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The RepID–CRL4 ubiquitin ligase complex regulates metaphase to anaphase transition via BUB3 degradation von Jang, Sang-Min, Nathans, Jenny F., Fu, Haiqing, Redon, Christophe E., Jenkins, Lisa M., Thakur, Bhushan L., Pongor, Lőrinc S., Baris, Adrian M., Gross, Jacob M., OʹNeill, Maura J., Indig, Fred E., Cappell, Steven D., Aladjem, Mirit I.

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Convergence of SIRT1 and ATR signaling to modulate replication origin dormancy von Thakur, Bhushan L, Baris, Adrian M, Fu, Haiqing, Redon, Christophe E, Pongor, Lorinc S, Mosavarpour, Sara, Gross, Jacob M, Jang, Sang-Min, Sebastian, Robin, Utani, Koichi, Jenkins, Lisa M, Indig, Fred E, Aladjem, Mirit I

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Genome-wide profiling of DNA repair proteins in single cells von de Luca, Kim L., Rullens, Pim M. J., Karpinska, Magdalena A., de Vries, Sandra S., Gacek-Matthews, Agnieszka, Pongor, Lőrinc S., Legube, Gaëlle, Jachowicz, Joanna W., Oudelaar, A. Marieke, Kind, Jop

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The efficiency of multi-target drugs: the network approach might help drug design von Csermely, Péter, Ágoston, Vilmos, Pongor, Sándor

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Dynamics of replication origin over-activation von Fu, Haiqing, Redon, Christophe E., Thakur, Bhushan L., Utani, Koichi, Sebastian, Robin, Jang, Sang-Min, Gross, Jacob M., Mosavarpour, Sara, Marks, Anna B., Zhuang, Sophie Z., Lazar, Sarah B., Rao, Mishal, Mencer, Shira T., Baris, Adrian M., Pongor, Lorinc S., Aladjem, Mirit I.

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Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification von Pongor, Lőrinc S, Vera, Roberto, Ligeti, Balázs

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Applied models and molecular characteristics of small cell lung cancer von Fűr, Gabriella Mihalekné, Nemes, Kolos, Magó, Éva, Benő, Alexandra Á, Topolcsányi, Petronella, Moldvay, Judit, Pongor, Lőrinc S

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Exploring the Significance of the Exon 4-Skipping Isoform of the ZNF217 Oncogene in Breast Cancer von Bellanger, Aurélie, Le, Diep T., Vendrell, Julie, Wierinckx, Anne, Pongor, Lőrinc S., Solassol, Jérôme, Lachuer, Joël, Clezardin, Philippe, Győrffy, Balázs, Cohen, Pascale A.

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ROC analysis: applications to the classification of biological sequences and 3D structures von Sonego, Paolo, Kocsor, András, Pongor, Sándor

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TP53 mutation hits energy metabolism and increases glycolysis in breast cancer von Harami-Papp, Hajnalka, Pongor, Lőrinc S, Munkácsy, Gyöngyi, Horváth, Gergő, Nagy, Ádám M, Ambrus, Attila, Hauser, Péter, Szabó, András, Tretter, László, Győrffy, Balázs

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BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks von Pongor, Lorinc S, Gross, Jacob M, Vera Alvarez, Roberto, Murai, Junko, Jang, Sang-Min, Zhang, Hongliang, Redon, Christophe, Fu, Haiqing, Huang, Shar-Yin, Thakur, Bhushan, Baris, Adrian, Marino-Ramirez, Leonardo, Landsman, David, Aladjem, Mirit I, Pommier, Yves

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HeurAA: accurate and fast detection of genetic variations with a novel heuristic amplicon aligner program for next generation sequencing von Pongor, Lőrinc S, Pintér, Ferenc, Peták, István

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SIRT1 Prevents R-Loops during Chronological Aging by Modulating DNA Replication at rDNA Loci von Thakur, Bhushan L, Kusi, Nana A, Mosavarpour, Sara, Zhu, Roger, Redon, Christophe E, Fu, Haiqing, Dhall, Anjali, Pongor, Lorinc S, Sebastian, Robin, Indig, Fred E, Aladjem, Mirit I

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Wanted DEAD/H or Alive: Helicases Winding Up in Cancers von Cai, Wanpei, Xiong Chen, Zhi, Rane, Grishma, Satendra Singh, Shikha, Choo, Zhang'e, Wang, Chao, Yuan, Yi, Zea Tan, Tuan, Arfuso, Frank, Yap, Celestial T, Pongor, Lorinc S, Yang, Henry, Lee, Martin B, Cher Goh, Boon, Sethi, Gautam, Benoukraf, Touati, Tergaonkar, Vinay, Prem Kumar, Alan

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Vicinal disulfide turns von Carugo, Oliviero, Čemažar, Maša, Zahariev, Sotir, Hudáky, Ilona, Gáspári, Zoltán, Perczel, András, Pongor, Sándor

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Integrative epigenomic analyses of small cell lung cancer cells demonstrates the clinical translational relevance of gene body methylation von Pongor, Lorinc S., Tlemsani, Camille, Elloumi, Fathi, Arakawa, Yasuhiro, Jo, Ukhyun, Gross, Jacob M., Mosavarpour, Sara, Varma, Sudhir, Kollipara, Rahul K., Roper, Nitin, Teicher, Beverly A., Aladjem, Mirit I., Reinhold, William, Thomas, Anish, Minna, John D., Johnson, Jane E., Pommier, Yves

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CDK-independent role of D-type cyclins in regulating DNA mismatch repair von Rona, Gergely, Miwatani-Minter, Bearach, Zhang, Qingyue, Goldberg, Hailey V., Kerzhnerman, Marc A., Howard, Jesse B., Simoneschi, Daniele, Lane, Ethan, Hobbs, John W., Sassani, Elizabeth, Wang, Andrew A., Keegan, Sarah, Laverty, Daniel J., Piett, Cortt G., Pongor, Lorinc S., Xu, Miranda Li, Andrade, Joshua, Thomas, Anish, Sicinski, Piotr, Askenazi, Manor, Ueberheide, Beatrix, Fenyö, David, Nagel, Zachary D., Pagano, Michele

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