CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model von Qi, Yifei, Cheng, Xi, Lee, Jumin, Vermaas, Josh V., Pogorelov, Taras V., Tajkhorshid, Emad, Park, Soohyung, Klauda, Jeffery B., Im, Wonpil

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Accelerating Membrane Insertion of Peripheral Proteins with a Novel Membrane Mimetic Model von Ohkubo, Y. Zenmei, Pogorelov, Taras V., Arcario, Mark J., Christensen, Geoff A., Tajkhorshid, Emad

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Bioinformatics-Guided Expansion and Discovery of Graspetides von Ramesh, Sangeetha, Guo, Xiaorui, DiCaprio, Adam J, De Lio, Ashley M, Harris, Lonnie A, Kille, Bryce L, Pogorelov, Taras V, Mitchell, Douglas A

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Hydrogen bonding heterogeneity correlates with protein folding transition state passage time as revealed by data sonification von Scaletti, Carla, Russell, Premila P Samuel, Hebel, Kurt J, Rickard, Meredith M, Boob, Mayank, Danksagmüller, Franz, Taylor, Stephen A, Pogorelov, Taras V, Gruebele, Martin

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Photodynamics in Complex Environments: Ab Initio Multiple Spawning Quantum Mechanical/Molecular Mechanical Dynamics von Virshup, Aaron M, Punwong, Chutintorn, Pogorelov, Taras V, Lindquist, Beth A, Ko, Chaehyuk, Martínez, Todd J

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Can Local Probes Go Global? A Joint Experiment–Simulation Analysis of λ6–85 Folding von Sukenik, Shahar, Pogorelov, Taras V, Gruebele, Martin

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Mapping fast protein folding with multiple-site fluorescent probes von Prigozhin, Maxim B, Shu-Han Chao, Shahar Sukenik, Taras V. Pogorelov, Martin Gruebele

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Lactaderhin's C1 domain restricts protein's ensemble as it binds to charged membranes von Jose Cheng, Kevin, Pogorelov, Taras V.

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Efficient sampling of TrkA transmembrane domain dimerization captures functionally distinct structural ensembles von Wang, Zichen, Pogorelov, Taras V.

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C3-OH of Amphotericin B Plays an Important Role in Ion Conductance von Davis, Stephen A, Della Ripa, Lisa A, Hu, Lingbowei, Cioffi, Alexander G, Pogorelov, Taras V, Rienstra, Chad M, Burke, Martin D

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Bioinformatic Mapping of Radical S‑Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Co... von Hudson, Graham A, Burkhart, Brandon J, DiCaprio, Adam J, Schwalen, Christopher J, Kille, Bryce, Pogorelov, Taras V, Mitchell, Douglas A

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Utility of FRET in studies of membrane protein oligomerization: The concept of the effective dissociation constant von McKenzie, Daniel M., Wirth, Daniel, Pogorelov, Taras V., Hristova, Kalina

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In-Cell Protein–Protein Contacts: Transient Interactions in the Crowd von Rickard, Meredith M, Zhang, Yi, Gruebele, Martin, Pogorelov, Taras V

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TMAO: Protecting proteins from feeling the heat von Boob, Mayank M., Sukenik, Shahar, Gruebele, Martin, Pogorelov, Taras V.

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Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism von Singharoy, Abhishek, Maffeo, Christopher, Delgado-Magnero, Karelia H., Swainsbury, David J.K., Sener, Melih, Kleinekathöfer, Ulrich, Vant, John W., Nguyen, Jonathan, Hitchcock, Andrew, Isralewitz, Barry, Teo, Ivan, Chandler, Danielle E., Stone, John E., Phillips, James C., Pogorelov, Taras V., Mallus, M. Ilaria, Chipot, Christophe, Luthey-Schulten, Zaida, Tieleman, D. Peter, Hunter, C. Neil, Tajkhorshid, Emad, Aksimentiev, Aleksei, Schulten, Klaus

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In-Cell Dynamics: The Next Focus of All-Atom Simulations von Samuel Russell, Premila P, Alaeen, Sepehr, Pogorelov, Taras V

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In silico protein dynamics in the human cytoplasm: Partial folding, misfolding, fold switching, and non‐native interactions von Russell, Premila P. Samuel, Rickard, Meredith M., Boob, Mayank, Gruebele, Martin, Pogorelov, Taras V.

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Impact of the Cellular Environment on Adenosine Triphosphate Conformations von Rickard, Meredith M., Luo, Haolin, De Lio, Ashley, Gruebele, Martin, Pogorelov, Taras V.

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Extension of the Highly Mobile Membrane Mimetic to Transmembrane Systems through Customized in Silico Solvents von Vermaas, Josh V, Pogorelov, Taras V, Tajkhorshid, Emad

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Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ(6-85) Folding von Sukenik, Shahar, Pogorelov, Taras V, Gruebele, Martin

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