BOSO: A novel feature selection algorithm for linear regression with high-dimensional data von Valcárcel, Luis V, San José-Enériz, Edurne, Cendoya, Xabier, Rubio, Ángel, Agirre, Xabier, Prósper, Felipe, Planes, Francisco J

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A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism von Apaolaza, Iñigo, San José-Enériz, Edurne, Valcarcel, Luis V, Agirre, Xabier, Prosper, Felipe, Planes, Francisco J

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An in-silico approach to predict and exploit synthetic lethality in cancer metabolism von Apaolaza, Iñigo, San José-Eneriz, Edurne, Tobalina, Luis, Miranda, Estíbaliz, Garate, Leire, Agirre, Xabier, Prósper, Felipe, Planes, Francisco J.

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gMCS: fast computation of genetic minimal cut sets in large networks von Apaolaza, Iñigo, Valcarcel, Luis Vitores, Planes, Francisco J

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Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method von Tobalina, Luis, Pey, Jon, Rezola, Alberto, Planes, Francisco J

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Direct calculation of minimal cut sets involving a specific reaction knock-out von Tobalina, Luis, Pey, Jon, Planes, Francisco J

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An automated network-based tool to search for metabolic vulnerabilities in cancer von Valcárcel, Luis V., San José-Enériz, Edurne, Ordoñez, Raquel, Apaolaza, Iñigo, Olaverri-Mendizabal, Danel, Barrena, Naroa, Valcárcel, Ana, Garate, Leire, San Miguel, Jesús, Pineda-Lucena, Antonio, Agirre, Xabier, Prósper, Felipe, Planes, Francisco J.

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Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks von Pey, Jon, Planes, Francisco J

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gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python von Rodriguez-Flores, Carlos J, Barrena, Naroa, Olaverri-Mendizabal, Danel, Ochoa, Idoia, Valcárcel, Luis V, Planes, Francisco J

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An extended reconstruction of human gut microbiota metabolism of dietary compounds von Blasco, Telmo, Pérez-Burillo, Sergio, Balzerani, Francesco, Hinojosa-Nogueira, Daniel, Lerma-Aguilera, Alberto, Pastoriza, Silvia, Cendoya, Xabier, Rubio, Ángel, Gosalbes, María José, Jiménez-Hernández, Nuria, Pilar Francino, M., Apaolaza, Iñigo, Rufián-Henares, José Ángel, Planes, Francisco J.

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Computational approach for collection and prediction of molecular initiating events in developmental toxicity von Cendoya, Xabier, Quevedo, Celia, Ipiñazar, Maitane, Planes, Francisco J.

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Computing the shortest elementary flux modes in genome-scale metabolic networks von de Figueiredo, Luis F., Podhorski, Adam, Rubio, Angel, Kaleta, Christoph, Beasley, John E., Schuster, Stefan, Planes, Francisco J.

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In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes von Rezola, Alberto, Pey, Jon, Rubio, Ángel, Planes, Francisco J

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BET inhibitors down-regulate the expression of the essential lncRNA SMILO in multiple myeloma through regulation of the transcription factor FLI1 von Gómez-Echarte, Nahia, José-Enériz, Edurne San, Carrasco-León, Arantxa, Barrena, Naroa, Miranda, Estibaliz, Garate, Leire, García-Torre, Beatriz, Alonso-Moreno, Sandra, Gimenez-Camino, Naroa, Urizar-Compains, Estibaliz, Olaverri-Mendizabal, Danel, Aguirre-Ruiz, Paula, Ariceta, Beñat, Tamariz-Amador, Luis-Esteban, Rodriguez-Otero, Paula, Planes, Francisco J, Belver, Laura, Martín-Subero, José Ignacio, Prosper, Felipe, Agirre, Xabier

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On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models von Ponce-de-León, Miguel, Apaolaza, Iñigo, Valencia, Alfonso, Planes, Francisco J

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CANCERTOOL: a visualization and representation interface to exploit cancer datasets von Cortazar, Ana R, Torrano, Veronica, Martín-Martín, Natalia, Caro-Maldonado, Alfredo, Camacho, Laura, Hermanova, Ivana, Guruceaga, Elizabeth, Lorenzo-Martín, Luis F, Caloto, Ruben, Gomis, Roger R, Apaolaza, Iñigo, Quesada, Víctor, Trka, Jan, Gomez-Muñoz, Antonio, Vicent, Silvestre, Bustelo, Xosé R, Planes, Francisco J, Aransay, Ana M, Carracedo, Arkaitz

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Path finding methods accounting for stoichiometry in metabolic networks von Pey, Jon, Prada, Joaquín, Beasley, John E, Planes, Francisco J

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Joint analysis of miRNA and mRNA expression data von Muniategui, Ander, Pey, Jon, Planes, Francisco J, Rubio, Angel

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BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities von Blasco, Telmo, Balzerani, Francesco, Valcárcel, Luis V, Larrañaga, Pedro, Bielza, Concha, Francino, María Pilar, Rufián-Henares, José Ángel, Planes, Francisco J, Pérez-Burillo, Sergio

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ALAD Inhibition by Porphobilinogen Rationalizes the Accumulation of δ‑Aminolevulinate in Acute Porphyrias von San Juan, Itxaso, Pereira-Ortuzar, Tania, Cendoya, Xabier, Laín, Ana, To-Figueras, Jordi, Mateos, Borja, Planes, Francisco J., Bernardo-Seisdedos, Ganeko, Mato, José M., Millet, Oscar

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