DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations von Rodrigues, Carlos H.M., Pires, Douglas E.V., Ascher, David B.

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Prediction and Optimization of Pharmacokinetic and Toxicity Properties of the Ligand von Pires, Douglas E. V., Kaminskas, Lisa M., Ascher, David B.

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Structural and Biochemical Insights into the Function and Evolution of Sulfoquinovosidases von Abayakoon, Palika, Jin, Yi, Lingford, James P, Petricevic, Marija, John, Alan, Ryan, Eileen, Wai-Ying Mui, Janice, Pires, Douglas E.V, Ascher, David B, Davies, Gideon J, Goddard-Borger, Ethan D, Williams, Spencer J

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Human LC3 and GABARAP subfamily members achieve functional specificity via specific structural modulations von Jatana, Nidhi, Ascher, David B., Pires, Douglas E.V., Gokhale, Rajesh S., Thukral, Lipi

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Platinum: a database of experimentally measured effects of mutations on structurally defined protein-ligand complexes von Pires, Douglas E V, Blundell, Tom L, Ascher, David B

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A Broad-Spectrum α-Glucosidase of Glycoside Hydrolase Family 13 from Marinovum sp., a Member of the Roseobacter Clade von Li, Jinling, Mui, Janice W.-Y., da Silva, Bruna M., Pires, Douglas E.V., Ascher, David B., Madiedo Soler, Niccolay, Goddard-Borger, Ethan D., Williams, Spencer J.

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PRIMITI: A computational approach for accurate prediction of miRNA-target mRNA interaction von Uthayopas, Korawich, de Sá, Alex G.C., Alavi, Azadeh, Pires, Douglas E.V., Ascher, David B.

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TSMDA: Target and symptom-based computational model for miRNA-disease-association prediction von Uthayopas, Korawich, de Sá, Alex G.C., Alavi, Azadeh, Pires, Douglas E.V., Ascher, David B.

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Distinguishing between PTEN clinical phenotypes through mutation analysis von Portelli, Stephanie, Barr, Lucy, de Sá, Alex G.C., Pires, Douglas E.V., Ascher, David B.

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Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase von Zhou, Yunzhuo, Portelli, Stephanie, Pat, Megan, Rodrigues, Carlos H.M., Nguyen, Thanh-Binh, Pires, Douglas E.V., Ascher, David B.

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Exploring Protein Supersecondary Structure Through Changes in Protein Folding, Stability, and Flexibility von Pires, Douglas E. V., Rodrigues, Carlos H. M., Albanaz, Amanda T. S., Karmakar, Malancha, Myung, Yoochan, Xavier, Joicymara, Michanetzi, Eleni-Maria, Portelli, Stephanie, Ascher, David B.

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mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity von Nguyen, Thanh Binh, Myung, Yoochan, de Sá, Alex G C, Pires, Douglas E V, Ascher, David B

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pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures von Pires, Douglas E. V, Blundell, Tom L, Ascher, David B

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SDHA related tumorigenesis: a new case series and literature review for variant interpretation and pathogenicity von Casey, Ruth T., Ascher, David B., Rattenberry, Eleanor, Izatt, Louise, Andrews, Katrina A., Simpson, Helen L., Challis, Benjamen, Park, Soo‐Mi, Bulusu, Venkata R., Lalloo, Fiona, Pires, Douglas E. V., West, Hannah, Clark, Graeme R., Smith, Philip S., Whitworth, James, Papathomas, Thomas G., Taniere, Phillipe, Savisaar, Rosina, Hurst, Laurence D., Woodward, Emma R., Maher, Eamonn R.

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DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability von Rodrigues, Carlos HM, Pires, Douglas EV, Ascher, David B

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mCSM: predicting the effects of mutations in proteins using graph-based signatures von Pires, Douglas E V, Ascher, David B, Blundell, Tom L

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mCSM-PPI2: predicting the effects of mutations on protein-protein interactions von Rodrigues, Carlos H M, Myung, Yoochan, Pires, Douglas E V, Ascher, David B

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DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach von Pires, Douglas E V, Ascher, David B, Blundell, Tom L

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mCSM-NA: predicting the effects of mutations on protein-nucleic acids interactions von Pires, Douglas E V, Ascher, David B

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A structural biology community assessment of AlphaFold2 applications von Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro

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