A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle von Akberdin, Ilya R., Kiselev, Ilya N., Pintus, Sergey S., Sharipov, Ruslan N., Vertyshev, Alexander Yu, Vinogradova, Olga L., Popov, Daniil, Kolpakov, Fedor A.

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Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle von Pintus, Sergey S., Akberdin, Ilya R., Yevshin, Ivan, Makhnovskii, Pavel, Tyapkina, Oksana, Nigmetzyanov, Islam, Nurullin, Leniz, Devyatiyarov, Ruslan, Shagimardanova, Elena, Popov, Daniil, Kolpakov, Fedor A., Gusev, Oleg, Gazizova, Guzel R.

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Genome of Russian Snow-White Chicken Reveals Genetic Features Associated with Adaptations to Cold and Diseases von Yevshin, Ivan S, Shagimardanova, Elena I, Ryabova, Anna S, Pintus, Sergey S, Kolpakov, Fedor A, Gusev, Oleg A

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Expression and molecular characterization of the Mycobacterium tuberculosis PII protein von Bandyopadhyay, Anannya, Arora, Amit, Jain, Sriyans, Laskar, Aparna, Mandal, Chhabinath, Ivanisenko, Vladimir A, Fomin, Eduard S, Pintus, Sergey S, Kolchanov, Nikolai A, Maiti, Souvik, Ramachandran, Srinivasan

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PDBSite: a database of the 3D structure of protein functional sites von Ivanisenko, Vladimir A., Pintus, Sergey S., Grigorovich, Dmitry A., Kolchanov, Nickolay A.

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PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins von Ivanisenko, Vladimir A., Pintus, Sergey S., Grigorovich, Dmitry A., Kolchanov, Nickolay A.

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Phylogenetic Analysis of the p53 and p63/p73 Gene Families von Pintus, Sergey S., Fomin, Eduard S., Oshurkov, Ivan S., Ivanisenko, Vladimir A.

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Phylogenetic Analysis of the p53 and p63/p73 Gene Families von PINTUS, Sergey S, FOMIN, Eduard S, OSHURKOV, Ivan S, IVANISENKO, Vladimir A

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Superposition of the DNA-binding domain of human p53 (PDB ID 1gzh) to the Zn binding site cytidine deaminase (PDB ID 1AF2) von Ivanisenko, Vladimir A., Pintus, Sergey S., Grigorovich, Dmitry A., Nickolay A. Kolchanov

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BioUML—towards a universal research platform von Kolpakov, Fedor, Akberdin, Ilya, Kiselev, Ilya, Kolmykov, Semyon, Kondrakhin, Yury, Kulyashov, Mikhail, Kutumova, Elena, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Zhatchenko, Sergey, Kel, Alexander

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BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data von Kolpakov, Fedor, Akberdin, Ilya, Kashapov, Timur, Kiselev, Llya, Kolmykov, Semyon, Kondrakhin, Yury, Kutumova, Elena, Mandrik, Nikita, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Kel, Alexander

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Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First? von Orekhov, Alexander N., Sukhorukov, Vasily N., Nikiforov, Nikita G., Kubekina, Marina V., Sobenin, Igor A., Foxx, Kathy K., Pintus, Sergey, Stegmaier, Philip, Stelmashenko, Daria, Kel, Alexander, Poznyak, Anastasia V., Wu, Wei-Kai, Kasianov, Artem S., Makeev, Vsevolod Y., Manabe, Ichiro, Oishi, Yumiko

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Role of Phagocytosis in the Pro-Inflammatory Response in LDL-Induced Foam Cell Formation; a Transcriptome Analysis von Orekhov, Alexander N., Nikiforov, Nikita G., Sukhorukov, Vasily N., Kubekina, Marina V., Sobenin, Igor A., Wu, Wei-Kai, Foxx, Kathy K., Pintus, Sergey, Stegmaier, Philip, Stelmashenko, Daria, Kel, Alexander, Gratchev, Alexei N., Melnichenko, Alexandra A., Wetzker, Reinhard, Summerhill, Volha I., Manabe, Ichiro, Oishi, Yumiko

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Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activato... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 6: Table S5. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 9: Table S8. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 4: Table S3. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 3: Table S2. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 8: Table S7. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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Additional file 5: Table S4. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to... von Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander

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