Sixteen novel lineages of SARS-CoV-2 in South Africa von Tegally, Houriiyah, Wilkinson, Eduan, Lessells, Richard J., Giandhari, Jennifer, Pillay, Sureshnee, Msomi, Nokukhanya, Mlisana, Koleka, Bhiman, Jinal N., von Gottberg, Anne, Walaza, Sibongile, Fonseca, Vagner, Allam, Mushal, Ismail, Arshad, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Williamson, Carolyn, Petruccione, Francesco, Sigal, Alex, Gazy, Inbal, Hardie, Diana, Hsiao, Nei-yuan, Martin, Darren, York, Denis, Goedhals, Dominique, San, Emmanuel James, Giovanetti, Marta, Lourenço, José, Alcantara, Luiz Carlos Junior, de Oliveira, Tulio

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Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection von Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex

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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq von Tshiabuila, Derek, Giandhari, Jennifer, Pillay, Sureshnee, Ramphal, Upasana, Ramphal, Yajna, Maharaj, Arisha, Anyaneji, Ugochukwu Jacob, Naidoo, Yeshnee, Tegally, Houriiyah, San, Emmanuel James, Wilkinson, Eduan, Lessells, Richard J, de Oliveira, Tulio

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Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report von Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio

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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing von Pillay, Sureshnee, San, James Emmanuel, Tshiabuila, Derek, Naidoo, Yeshnee, Pillay, Yusasha, Maharaj, Akhil, Anyaneji, Ugochukwu J, Wilkinson, Eduan, Tegally, Houriiyah, Lessells, Richard J, Baxter, Cheryl, de Oliveira, Tulio, Giandhari, Jennifer

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Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021 von Bbosa, Nicholas, Ssemwanga, Deogratius, Namagembe, Hamidah, Kiiza, Ronald, Kiconco, Jocelyn, Kayiwa, John, Lutalo, Tom, Lutwama, Julius, Ssekagiri, Alfred, Ssewanyana, Isaac, Nabadda, Susan, Kyobe-Bbosa, Henry, Giandhari, Jennifer, Pillay, Sureshnee, Ramphal, Upasana, Ramphal, Yajna, Naidoo, Yeshnee, Tshiabuila, Derek, Tegally, Houriiyah, San, Emmanuel J, Wilkinson, Eduan, de Oliveira, Tulio, Kaleebu, Pontiano

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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic von Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Jr, Luiz Carlos, de Oliveira, Tulio

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SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022 von Subramoney, Kathleen, Mtileni, Nkhensani, Davis, Ashlyn, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Naidoo, Yeshnee, Ramphal, Yajna, Pillay, Sureshnee, Ramphal, Upasana, Simane, Andiswa, Reddy, Bhaveshan, Mashishi, Bonolo, Mbenenge, Nonhlanhla, de Oliveira, Tulio, Fielding, Burtram C, Treurnicht, Florette K

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Author Correction: Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection von Khan, Khadija, Karim, Farina, Ganga, Yashica, Bernstein, Mallory, Jule, Zesuliwe, Reedoy, Kajal, Cele, Sandile, Lustig, Gila, Amoako, Daniel, Wolter, Nicole, Samsunder, Natasha, Sivro, Aida, San, James Emmanuel, Giandhari, Jennifer, Tegally, Houriiyah, Pillay, Sureshnee, Naidoo, Yeshnee, Mazibuko, Matilda, Miya, Yoliswa, Ngcobo, Nokuthula, Manickchund, Nithendra, Magula, Nombulelo, Karim, Quarraisha Abdool, von Gottberg, Anne, Abdool Karim, Salim S., Hanekom, Willem, Gosnell, Bernadett I., Lessells, Richard J., de Oliveira, Tulio, Moosa, Mahomed-Yunus S., Sigal, Alex

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Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages von Subramoney, Kathleen, Mtileni, Nkhensani, Giandhari, Jennifer, Naidoo, Yeshnee, Ramphal, Yajna, Pillay, Sureshnee, Ramphal, Upasana, Maharaj, Akhil, Tshiabuila, Derek, Tegally, Houriiyah, Wilkinson, Eduan, de Oliveira, Tulio, Fielding, Burtram C, Treurnicht, Florette K

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Correction: Subramoney et al. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. Viruses 2023, 15 , 1194 von Subramoney, Kathleen, Mtileni, Nkhensani, Giandhari, Jennifer, Naidoo, Yeshnee, Ramphal, Yajna, Pillay, Sureshnee, Ramphal, Upasana, Maharaj, Akhil, Tshiabuila, Derek, Tegally, Houriiyah, Wilkinson, Eduan, Oliveira, Tulio de, Fielding, Burtram C, Treurnicht, Florette K

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A genomics network established to respond rapidly to public health threats in South Africa von Msomi, Nokukhanya, Mlisana, Koleka, de Oliveira, Tulio, Msomi, Nokukhanya, Mlisana, Koleka, Willianson, Carolyn, Bhiman, Jinal N., Goedhals, Dominique, Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Hardie, Diana, Hsiao, Marvin, Mulder, Nicola, Martin, Darren, Christoffels, Alan, York, Denis, Giandhari, Jennifer, Wilkinson, Eduan, Pillay, Sureshnee, Tegally, Houriiyah, James, San Emmanuel, Kanzi, Aquilah, Lessells, Richard John, de Oliveira, Tulio

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Evidence of long-lived founder virus in mother-to-child HIV transmission von Danaviah, Sivapragashini, de Oliveira, Tulio, Bland, Ruth, Viljoen, Johannes, Pillay, Sureshnee, Tuaillon, Edouard, Van de Perre, Philippe, Newell, Marie-Louise

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Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique von Ismael, Nalia, van Wyk, Stephanie, Tegally, Houriiyah, Giandhari, Jennifer, San, James Emmanuel, Moir, Monika, Pillay, Sureshnee, Utpatel, Christian, Singh, Lavanya, Naidoo, Yeshnee, Ramphal, Upasana, Mabunda, Nédio, Abílio, Nuro, Arnaldo, Paulo, Xavier, Joicymara, Amoako, Daniel Gyamfi, Everatt, Josie, Ramphal, Yajna, Maharaj, Arisha, de Araujo, Leonardo, Anyaneji, Ugochukwu J, Tshiabuila, Derek, Viegas, Sofia, Lessells, Richard, Engelbrecht, Susan, Gudo, Eduardo, Jani, Ilesh, Niemann, Stefan, Wilkinson, Eduan, de Oliveira, Túlio

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SARS-CoV-2 variants from COVID-19 positive cases in the Free State province, South Africa from July 2020 to December 2021 von Mwangi, Peter, Okendo, Javan, Mogotsi, Milton, Ogunbayo, Ayodeji, Adelabu, Olusesan, Sondlane, Hlengiwe, Maotoana, Makgotso, Mahomed, Lutfiyya, Morobadi, Molefi Daniel, Vawda, Sabeehah, von Gottberg, Anne, Bhiman, Jinal, Tegally, Houriiyah, Wilkinson, Eduan, Giandhari, Jennifer, Pillay, Sureshnee, Naidoo, Yeshnee, Ramphal, Upasana, de Oliveira, Tulio, Bester, Armand, Goedhals, Dominique, Nyaga, Martin

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Detection of a SARS-CoV-2 variant of concern in South Africa von Tegally, Houriiyah, Wilkinson, Eduan, Giovanetti, Marta, Iranzadeh, Arash, Fonseca, Vagner, Giandhari, Jennifer, Doolabh, Deelan, Pillay, Sureshnee, San, Emmanuel James, Msomi, Nokukhanya, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Nei-yuan, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Alcantara, Luiz Carlos Junior, Kosakovsky Pond, Sergei L., Weaver, Steven, Martin, Darren, Lessells, Richard J., Bhiman, Jinal N., Williamson, Carolyn, de Oliveira, Tulio

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T cell responses to SARS-CoV-2 spike cross-recognize Omicron von Keeton, Roanne, Tincho, Marius B., Ngomti, Amkele, Baguma, Richard, Benede, Ntombi, Suzuki, Akiko, Khan, Khadija, Cele, Sandile, Bernstein, Mallory, Karim, Farina, Madzorera, Sharon V., Moyo-Gwete, Thandeka, Mennen, Mathilda, Skelem, Sango, Adriaanse, Marguerite, Mutithu, Daniel, Aremu, Olukayode, Stek, Cari, du Bruyn, Elsa, Van Der Mescht, Mieke A., de Beer, Zelda, de Villiers, Talita R., Bodenstein, Annie, van den Berg, Gretha, Mendes, Adriano, Strydom, Amy, Venter, Marietjie, Giandhari, Jennifer, Naidoo, Yeshnee, Pillay, Sureshnee, Tegally, Houriiyah, Grifoni, Alba, Weiskopf, Daniela, Sette, Alessandro, Wilkinson, Robert J., de Oliveira, Tulio, Bekker, Linda-Gail, Gray, Glenda, Ueckermann, Veronica, Rossouw, Theresa, Boswell, Michael T., Bhiman, Jinal N., Moore, Penny L., Sigal, Alex, Ntusi, Ntobeko A. B., Burgers, Wendy A., Riou, Catherine

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Experimental validation of taxon-specific mini-barcode primers for metabarcoding of zooplankton von Govender, Ashrenee, Singh, Sohana, Groeneveld, Johan, Pillay, Sureshnee, Willows-Munro, Sandi

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Escape of SARS-CoV-2 501Y.V2 from neutralization by convalescent plasma von Cele, Sandile, Gazy, Inbal, Jackson, Laurelle, Hwa, Shi-Hsia, Tegally, Houriiyah, Lustig, Gila, Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Naidoo, Yeshnee, Karim, Farina, Ganga, Yashica, Khan, Khadija, Bernstein, Mallory, Balazs, Alejandro B., Gosnell, Bernadett I., Hanekom, Willem, Moosa, Mahomed-Yunus S., Lessells, Richard J., de Oliveira, Tulio, Sigal, Alex

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Metabarcoding analysis of marine zooplankton confirms the ecological role of a sheltered bight along an exposed continental shelf von Govender, Ashrenee, Singh, Sohana, Groeneveld, Johan, Pillay, Sureshnee, Willows‐Munro, Sandi

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