Tximeta: Reference sequence checksums for provenance identification in RNA-seq von Love, Michael I, Soneson, Charlotte, Hickey, Peter F, Johnson, Lisa K, Pierce, N Tessa, Shepherd, Lori, Morgan, Martin, Patro, Rob

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Large-scale sequence comparisons with sourmash [version 1; peer review: 2 approved] von Pierce, N. Tessa, Irber, Luiz, Reiter, Taylor, Brooks, Phillip, Brown, C. Titus

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Recovery from hybrid breakdown reveals a complex genetic architecture of mitonuclear incompatibilities von Pereira, Ricardo J., Lima, Thiago G., Pierce‐Ward, N. Tessa, Chao, Lin, Burton, Ronald S.

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Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets von Portik, Daniel M, Brown, C Titus, Pierce-Ward, N Tessa

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Development of Embryonic Market Squid, Doryteuthis opalescens, under Chronic Exposure to Low Environmental pH and [O2] von Navarro, Michael O, Kwan, Garfield T, Batalov, Olga, Choi, Chelsea Y, Pierce, N Tessa, Levin, Lisa A

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Ten simple rules and a template for creating workflows-as-applications von Roach, Michael J, Pierce-Ward, N Tessa, Suchecki, Radoslaw, Mallawaarachchi, Vijini, Papudeshi, Bhavya, Handley, Scott A, Brown, C Titus, Watson-Haigh, Nathan S, Edwards, Robert A

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Biogeographic distribution of five Antarctic cyanobacteria using large-scale k-mer searching with sourmash branchwater von Lumian, Jessica, Sumner, Dawn Y, Grettenberger, Christen L, Jungblut, Anne D, Irber, Luiz, Pierce-Ward, N Tessa, Brown, C Titus

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Could a Focus on the "Why" of Taxonomy Help Taxonomy Better Respond to the Needs of Science and Society? von Pritchard, Leighton, Brown, C Titus, Harrington, Bailey, Heath, Lenwood S, Pierce-Ward, N Tessa, Vinatzer, Boris A

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Transcriptome‐wide patterns of divergence during allopatric evolution von Pereira, Ricardo J, Barreto, Felipe S, Pierce, N. Tessa, Carneiro, Miguel, Burton, Ronald S

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Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash von Rahman Hera, Mahmudur, Pierce-Ward, N Tessa, Koslicki, David

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Marine Natural Product Honaucin A Attenuates Inflammation by Activating the Nrf2-ARE Pathway von Mascuch, Samantha J, Boudreau, Paul D, Carland, Tristan M, Pierce, N. Tessa, Olson, Joshua, Hensler, Mary E, Choi, Hyukjae, Campanale, Joseph, Hamdoun, Amro, Nizet, Victor, Gerwick, William H, Gaasterland, Teresa, Gerwick, Lena

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LINgroups as a Robust Principled Approach to Compare and Integrate Multiple Bacterial Taxonomies von Mazloom, Reza, Pierce-Ward, N. Tessa, Sharma, Parul, Pritchard, Leighton, Brown, C. Titus, Vinatzer, Boris A., Heath, Lenwood S.

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Streamlining data-intensive biology with workflow systems von Reiter, Taylor, Brooks†, Phillip T, Irber†, Luiz, Joslin†, Shannon E K, Reid†, Charles M, Scott†, Camille, Brown, C Titus, Pierce-Ward, N Tessa

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Ten simple rules and a template for creating workflows-as-applications von Michael J Roach, N Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A Handley, C Titus Brown, Nathan S Watson-Haigh, Robert A Edwards

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sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets von Irber, Luiz, Pierce-Ward, N. Tessa, Abuelanin, Mohamed, Alexander, Harriet, Anant, Abhishek, Barve, Keya, Baumler, Colton, Botvinnik, Olga, Brooks, Phillip, Dsouza, Daniel, Gautier, Laurent, Hera, Mahmudur Rahman, Houts, Hannah Eve, Johnson, Lisa K., Klötzl, Fabian, Koslicki, David, Lim, Marisa, Lim, Ricky, Nelson, Bradley, Ogasawara, Ivan, Reiter, Taylor, Scott, Camille, Sjödin, Andreas, Standage, Daniel, Swamidass, S. Joshua, Tiffany, Connor, Vemuri, Pranathi, Young, Erik, Brown, C. Titus

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Recovery from hybrid breakdown reveals a complex genetic architecture of mitonuclear incompatibilities von Pereira, Ricardo J, Lima, Thiago G, Pierce‐Ward, N. Tessa, Chao, Lin, Burton, Ronald S

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Data from: Transcriptome-wide patterns of divergence during allopatric evolution von Pereira, Ricardo J., Barreto, Felipe S., Pierce, N. Tessa, Carneiro, Miguel, Burton, Ronald S.

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tree_files von Pereira, Ricardo J., Barreto, Felipe S., Pierce, N. Tessa, Carneiro, Miguel, Burton, Ronald S.

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polymorphisms von Pereira, Ricardo J., Barreto, Felipe S., Pierce, N. Tessa, Carneiro, Miguel, Burton, Ronald S.

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alignments von Pereira, Ricardo J., Barreto, Felipe S., Pierce, N. Tessa, Carneiro, Miguel, Burton, Ronald S.

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