Chromatin Insulators: Linking Genome Organization to Cellular Function von Phillips-Cremins, Jennifer E., Corces, Victor G.

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On the existence and functionality of topologically associating domains von Beagan, Jonathan A., Phillips-Cremins, Jennifer E.

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Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment von Phillips-Cremins, Jennifer E., Sauria, Michael E.G., Sanyal, Amartya, Gerasimova, Tatiana I., Lajoie, Bryan R., Bell, Joshua S.K., Ong, Chin-Tong, Hookway, Tracy A., Guo, Changying, Sun, Yuhua, Bland, Michael J., Wagstaff, William, Dalton, Stephen, McDevitt, Todd C., Sen, Ranjan, Dekker, Job, Taylor, James, Corces, Victor G.

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YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment von Beagan, Jonathan A, Duong, Michael T, Titus, Katelyn R, Zhou, Linda, Cao, Zhendong, Ma, Jingjing, Lachanski, Caroline V, Gillis, Daniel R, Phillips-Cremins, Jennifer E

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Chromatin structure dynamics during the mitosis-to-G1 phase transition von Zhang, Haoyue, Emerson, Daniel J., Gilgenast, Thomas G., Titus, Katelyn R., Lan, Yemin, Huang, Peng, Zhang, Di, Wang, Hongxin, Keller, Cheryl A., Giardine, Belinda, Hardison, Ross C., Phillips-Cremins, Jennifer E., Blobel, Gerd A.

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Engineering graded tissue interfaces von Phillips, Jennifer E, Burns, Kellie L, Le Doux, Joseph M, Guldberg, Robert E, García, Andrés J

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LADL: light-activated dynamic looping for endogenous gene expression control von Kim, Ji Hun, Rege, Mayuri, Valeri, Jacqueline, Dunagin, Margaret C., Metzger, Aryeh, Titus, Katelyn R., Gilgenast, Thomas G., Gong, Wanfeng, Beagan, Jonathan A., Raj, Arjun, Phillips-Cremins, Jennifer E.

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The importance of the whole: Topological data analysis for the network neuroscientist von Sizemore, Ann E., Phillips-Cremins, Jennifer E., Ghrist, Robert, Bassett, Danielle S.

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Subjective socioeconomic status and presence of the metabolic syndrome in midlife community volunteers von Manuck, Stephen B, Phillips, Jennifer E, Gianaros, Peter J, Flory, Janine D, Muldoon, Matthew F

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CTCF: Master Weaver of the Genome von Phillips, Jennifer E., Corces, Victor G.

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Cohesin-mediated loop anchors confine the locations of human replication origins von Emerson, Daniel J., Zhao, Peiyao A., Cook, Ashley L., Barnett, R. Jordan, Klein, Kyle N., Saulebekova, Dalila, Ge, Chunmin, Zhou, Linda, Simandi, Zoltan, Minsk, Miriam K., Titus, Katelyn R., Wang, Weitao, Gong, Wanfeng, Zhang, Di, Yang, Liyan, Venev, Sergey V., Gibcus, Johan H., Yang, Hongbo, Sasaki, Takayo, Kanemaki, Masato T., Yue, Feng, Dekker, Job, Chen, Chun-Long, Gilbert, David M., Phillips-Cremins, Jennifer E.

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HiFive: a tool suite for easy and efficient HiC and 5C data analysis von Sauria, Michael Eg, Phillips-Cremins, Jennifer E, Corces, Victor G, Taylor, James

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Cohesin-dependence of neuronal gene expression relates to chromatin loop length von Calderon, Lesly, Weiss, Felix D, Beagan, Jonathan A, Oliveira, Marta S, Georgieva, Radina, Wang, Yi-Fang, Carroll, Thomas S, Dharmalingam, Gopuraja, Gong, Wanfeng, Tossell, Kyoko, de Paola, Vincenzo, Whilding, Chad, Ungless, Mark A, Fisher, Amanda G, Phillips-Cremins, Jennifer E, Merkenschlager, Matthias

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Unraveling architecture of the pluripotent genome von Phillips-Cremins, Jennifer E

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3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data von Fernandez, Lindsey R, Gilgenast, Thomas G, Phillips-Cremins, Jennifer E

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Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice von Kwon, Deborah Y., Xu, Bing, Hu, Peng, Zhao, Ying-Tao, Beagan, Jonathan A., Nofziger, Jonathan H., Cui, Yue, Phillips-Cremins, Jennifer E., Blendy, Julie A., Wu, Hao, Zhou, Zhaolan

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Glucocorticoid-induced osteogenesis is negatively regulated by Runx2/Cbfa1 serine phosphorylation von Phillips, Jennifer E, Gersbach, Charles A, Wojtowicz, Abigail M, García, Andrés J

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Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming von Beagan, Jonathan A., Gilgenast, Thomas G., Kim, Jesi, Plona, Zachary, Norton, Heidi K., Hu, Gui, Hsu, Sarah C., Shields, Emily J., Lyu, Xiaowen, Apostolou, Effie, Hochedlinger, Konrad, Corces, Victor G., Dekker, Job, Phillips-Cremins, Jennifer E.

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Promoter-anchored chromatin interactions predicted from genetic analysis of epigenomic data von Wu, Yang, Qi, Ting, Wang, Huanwei, Zhang, Futao, Zheng, Zhili, Phillips-Cremins, Jennifer E., Deary, Ian J., McRae, Allan F., Wray, Naomi R., Zeng, Jian, Yang, Jian

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Human mesenchymal stem cell differentiation on self-assembled monolayers presenting different surface chemistries von Phillips, Jennifer E., Petrie, Timothy A., Creighton, Francis P., García, Andrés J.

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