NCBI GEO: archive for functional genomics data sets--10 years on von Barrett, Tanya, Troup, Dennis B, Wilhite, Stephen E, Ledoux, Pierre, Evangelista, Carlos, Kim, Irene F, Tomashevsky, Maxim, Marshall, Kimberly A, Phillippy, Katherine H, Sherman, Patti M, Muertter, Rolf N, Holko, Michelle, Ayanbule, Oluwabukunmi, Yefanov, Andrey, Soboleva, Alexandra

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NCBI GEO: archive for high-throughput functional genomic data von Barrett, Tanya, Troup, Dennis B, Wilhite, Stephen E, Ledoux, Pierre, Rudnev, Dmitry, Evangelista, Carlos, Kim, Irene F, Soboleva, Alexandra, Tomashevsky, Maxim, Marshall, Kimberly A, Phillippy, Katherine H, Sherman, Patti M, Muertter, Rolf N, Edgar, Ron

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Statistical Analysis of Microarray Data with Replicated Spots : A Case Study with Synechococcus WH8102 von Thomas, E. V., Phillippy, K. H., Brahamsha, B., Haaland, D. M., Timlin, J. A., Elbourne, L. D. H., Palenik, B., Paulsen, I. T.

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Statistical Analysis of Microarray Data with Replicated Spots: A Case Study with Synechococcus WH8102 von Paulsen, I. T., Elbourne, L. D. H., Timlin, J. A., Haaland, D. M., Brahamsha, B., Phillippy, K. H., Thomas, E. V., Palenik, B.

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Complete genomic and epigenetic maps of human centromeres von Altemose, Nicolas, Logsdon, Glennis A, Bzikadze, Andrey V, Sidhwani, Pragya, Langley, Sasha A, Caldas, Gina V, Hoyt, Savannah J, Uralsky, Lev, Ryabov, Fedor D, Shew, Colin J, Sauria, Michael E G, Borchers, Matthew, Gershman, Ariel, Mikheenko, Alla, Shepelev, Valery A, Dvorkina, Tatiana, Kunyavskaya, Olga, Vollger, Mitchell R, Rhie, Arang, McCartney, Ann M, Asri, Mobin, Lorig-Roach, Ryan, Shafin, Kishwar, Lucas, Julian K, Aganezov, Sergey, Olson, Daniel, de Lima, Leonardo Gomes, Potapova, Tamara, Hartley, Gabrielle A, Haukness, Marina, Kerpedjiev, Peter, Gusev, Fedor, Tigyi, Kristof, Brooks, Shelise, Young, Alice, Nurk, Sergey, Koren, Sergey, Salama, Sofie R, Paten, Benedict, Rogaev, Evgeny I, Streets, Aaron, Karpen, Gary H, Dernburg, Abby F, Sullivan, Beth A, Straight, Aaron F, Wheeler, Travis J, Gerton, Jennifer L, Eichler, Evan E, Phillippy, Adam M, Timp, Winston, Dennis, Megan Y, O'Neill, Rachel J, Zook, Justin M, Schatz, Michael C, Pevzner, Pavel A, Diekhans, Mark, Langley, Charles H, Alexandrov, Ivan A, Miga, Karen H

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The Human Pangenome Project: a global resource to map genomic diversity von Wang, Ting, Antonacci-Fulton, Lucinda, Howe, Kerstin, Lawson, Heather A., Lucas, Julian K., Phillippy, Adam M., Popejoy, Alice B., Asri, Mobin, Carson, Caryn, Chaisson, Mark J. P., Chang, Xian, Cook-Deegan, Robert, Felsenfeld, Adam L., Fulton, Robert S., Garrison, Erik P., Garrison, Nanibaa’ A., Graves-Lindsay, Tina A., Ji, Hanlee, Kenny, Eimear E., Koenig, Barbara A., Li, Daofeng, Marschall, Tobias, McMichael, Joshua F., Novak, Adam M., Purushotham, Deepak, Schneider, Valerie A., Schultz, Baergen I., Smith, Michael W., Sofia, Heidi J., Weissman, Tsachy, Flicek, Paul, Li, Heng, Miga, Karen H., Paten, Benedict, Jarvis, Erich D., Hall, Ira M., Eichler, Evan E., Haussler, David

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The complete sequence of a human Y chromosome von Rhie, Arang, Nurk, Sergey, Cechova, Monika, Hoyt, Savannah J., Taylor, Dylan J., Altemose, Nicolas, Hook, Paul W., Koren, Sergey, Rautiainen, Mikko, Alexandrov, Ivan A., Allen, Jamie, Asri, Mobin, Bzikadze, Andrey V., Chen, Nae-Chyun, Chin, Chen-Shan, Diekhans, Mark, Flicek, Paul, Formenti, Giulio, Fungtammasan, Arkarachai, Garcia Giron, Carlos, Garrison, Erik, Gershman, Ariel, Gerton, Jennifer L., Grady, Patrick G. S., Guarracino, Andrea, Haggerty, Leanne, Halabian, Reza, Hansen, Nancy F., Harris, Robert, Hartley, Gabrielle A., Harvey, William T., Haukness, Marina, Heinz, Jakob, Hourlier, Thibaut, Hubley, Robert M., Hunt, Sarah E., Hwang, Stephen, Jain, Miten, Kesharwani, Rupesh K., Lewis, Alexandra P., Li, Heng, Logsdon, Glennis A., Lucas, Julian K., Makalowski, Wojciech, Markovic, Christopher, Martin, Fergal J., Mc Cartney, Ann M., McCoy, Rajiv C., McDaniel, Jennifer, McNulty, Brandy M., Medvedev, Paul, Mikheenko, Alla, Munson, Katherine M., Murphy, Terence D., Olsen, Hugh E., Olson, Nathan D., Paulin, Luis F., Porubsky, David, Potapova, Tamara, Ryabov, Fedor, Salzberg, Steven L., Sauria, Michael E. G., Sedlazeck, Fritz J., Shafin, Kishwar, Shepelev, Valery A., Shumate, Alaina, Storer, Jessica M., Surapaneni, Likhitha, Taravella Oill, Angela M., Thibaud-Nissen, Françoise, Timp, Winston, Tomaszkiewicz, Marta, Vollger, Mitchell R., Walenz, Brian P., Watwood, Allison C., Weissensteiner, Matthias H., Wenger, Aaron M., Wilson, Melissa A., Zarate, Samantha, Zhu, Yiming, Zook, Justin M., Eichler, Evan E., O’Neill, Rachel J., Schatz, Michael C., Miga, Karen H., Makova, Kateryna D., Phillippy, Adam M.

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Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes von Seshadri, Rekha, Adrian, Lorenz, Fouts, Derrick E, Eisen, Jonathan A, Phillippy, Adam M, Methe, Barbara A, Ward, Naomi L, Nelson, William C, Deboy, Robert T, Khouri, Hoda M, Kolonay, James F, Dodson, Robert J, Daugherty, Sean C, Brinkac, Lauren M, Sullivan, Steven A, Madupu, Ramana, Nelson, Karen E, Kang, Katherine H, Impraim, Marjorie, Tran, Kevin, Robinson, Jeffrey M, Forberger, Heather A, Fraser, Claire M, Zinder, Stephen H, Heidelberg, John F

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Improved reference genome of Aedes aegypti informs arbovirus vector control von Matthews, Benjamin J., Dudchenko, Olga, Kingan, Sarah B., Koren, Sergey, Antoshechkin, Igor, Crawford, Jacob E., Glassford, William J., Herre, Margaret, Redmond, Seth N., Rose, Noah H., Weedall, Gareth D., Wu, Yang, Batra, Sanjit S., Brito-Sierra, Carlos A., Buckingham, Steven D., Campbell, Corey L., Chan, Saki, Cox, Eric, Evans, Benjamin R., Fansiri, Thanyalak, Filipović, Igor, Fontaine, Albin, Gloria-Soria, Andrea, Hall, Richard, Joardar, Vinita S., Jones, Andrew K., Kay, Raissa G. G., Kodali, Vamsi K., Lee, Joyce, Lycett, Gareth J., Mitchell, Sara N., Muehling, Jill, Murphy, Michael R., Omer, Arina D., Partridge, Frederick A., Peluso, Paul, Aiden, Aviva Presser, Ramasamy, Vidya, Rašić, Gordana, Roy, Sourav, Saavedra-Rodriguez, Karla, Sharan, Shruti, Sharma, Atashi, Smith, Melissa Laird, Turner, Joe, Weakley, Allison M., Zhao, Zhilei, Akbari, Omar S., Black, William C., Cao, Han, Darby, Alistair C., Hill, Catherine A., Johnston, J. Spencer, Murphy, Terence D., Raikhel, Alexander S., Sattelle, David B., Sharakhov, Igor V., White, Bradley J., Zhao, Li, Aiden, Erez Lieberman, Mann, Richard S., Lambrechts, Louis, Powell, Jeffrey R., Sharakhova, Maria V., Tu, Zhijian, Robertson, Hugh M., McBride, Carolyn S., Hastie, Alex R., Korlach, Jonas, Neafsey, Daniel E., Phillippy, Adam M., Vosshall, Leslie B.

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Assemblathon 1: a competitive assessment of de novo short read assembly methods von Earl, Dent, Bradnam, Keith, St John, John, Darling, Aaron, Lin, Dawei, Fass, Joseph, Yu, Hung On Ken, Buffalo, Vince, Zerbino, Daniel R, Diekhans, Mark, Nguyen, Ngan, Ariyaratne, Pramila Nuwantha, Sung, Wing-Kin, Ning, Zemin, Haimel, Matthias, Simpson, Jared T, Fonseca, Nuno A, Birol, İnanç, Docking, T Roderick, Ho, Isaac Y, Rokhsar, Daniel S, Chikhi, Rayan, Lavenier, Dominique, Chapuis, Guillaume, Naquin, Delphine, Maillet, Nicolas, Schatz, Michael C, Kelley, David R, Phillippy, Adam M, Koren, Sergey, Yang, Shiaw-Pyng, Wu, Wei, Chou, Wen-Chi, Srivastava, Anuj, Shaw, Timothy I, Ruby, J Graham, Skewes-Cox, Peter, Betegon, Miguel, Dimon, Michelle T, Solovyev, Victor, Seledtsov, Igor, Kosarev, Petr, Vorobyev, Denis, Ramirez-Gonzalez, Ricardo, Leggett, Richard, MacLean, Dan, Xia, Fangfang, Luo, Ruibang, Li, Zhenyu, Xie, Yinlong, Liu, Binghang, Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J, Yin, Shuangye, Sharpe, Ted, Hall, Giles, Kersey, Paul J, Durbin, Richard, Jackman, Shaun D, Chapman, Jarrod A, Huang, Xiaoqiu, DeRisi, Joseph L, Caccamo, Mario, Li, Yingrui, Jaffe, David B, Green, Richard E, Haussler, David, Korf, Ian, Paten, Benedict

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Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923 von Treangen, Todd J, Maybank, Rosslyn A, Enke, Sana, Friss, Mary Beth, Diviak, Lynn F, Karaolis, David K R, Koren, Sergey, Ondov, Brian, Phillippy, Adam M, Bergman, Nicholas H, Rosovitz, M J

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Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station von Venkateswaran, Kasthuri, Sielaff, Aleksandra Checinska, Ratnayake, Shashikala, Pope, Robert K, Blank, Thomas E, Stepanov, Victor G, Fox, George E, Tongeren, Sandra P van, Torres, Clinton, Allen, Jonathan, Jaing, Crystal, Pierson, Duane, Perry, Jay, Koren, Sergey, Phillippy, Adam, Klubnik, Joy, Treangen, Todd J, Rosovitz, M J, Bergman, Nicholas H

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Purification and some properties of inositol 1,3,4,5,6-pentakisphosphate 2-kinase from immature soybean seeds von Phillippy, B.Q. (USDA, ARS, SRRC, New Orleans, LA.), Ullah, A.H.J, Ehrlich, K.C

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Preparation of inositol phosphates from sodium phytate by enzymatic and nonenzymatic hydrolysis von Phillippy, B.Q., White, K.D., Johnston, M.R., Tao, S.-H., Fox, M.R.S.

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The complete sequence of a human Y chromosome von Rhie, Arang, Nurk, Sergey, Cechova, Monika, Hoyt, Savannah J, Taylor, Dylan J, Altemose, Nicolas, Hook, Paul W, Koren, Sergey, Rautiainen, Mikko, Alexandrov, Ivan A, Allen, Jamie, Asri, Mobin, Bzikadze, Andrey V, Chen, Nae-Chyun, Chin, Chen-Shan, Diekhans, Mark, Flicek, Paul, Formenti, Giulio, Fungtammasan, Arkarachai, Garcia Giron, Carlos, Garrison, Erik, Gershman, Ariel, Gerton, Jennifer L, Grady, Patrick GS, Guarracino, Andrea, Haggerty, Leanne, Halabian, Reza, Hansen, Nancy F, Harris, Robert, Hartley, Gabrielle A, Harvey, William T, Haukness, Marina, Heinz, Jakob, Hourlier, Thibaut, Hubley, Robert M, Hunt, Sarah E, Hwang, Stephen, Jain, Miten, Kesharwani, Rupesh K, Lewis, Alexandra P, Li, Heng, Logsdon, Glennis A, Lucas, Julian K, Makalowski, Wojciech, Markovic, Christopher, Martin, Fergal J, Mc Cartney, Ann M, McCoy, Rajiv C, McDaniel, Jennifer, McNulty, Brandy M, Medvedev, Paul, Mikheenko, Alla, Munson, Katherine M, Murphy, Terence D, Olsen, Hugh E, Olson, Nathan D, Paulin, Luis F, Porubsky, David, Potapova, Tamara, Ryabov, Fedor, Salzberg, Steven L, Sauria, Michael EG, Sedlazeck, Fritz J, Shafin, Kishwar, Shepelev, Valery A, Shumate, Alaina, Storer, Jessica M, Surapaneni, Likhitha, Taravella Oill, Angela M, Thibaud-Nissen, Françoise, Timp, Winston, Tomaszkiewicz, Marta, Vollger, Mitchell R, Walenz, Brian P, Watwood, Allison C, Weissensteiner, Matthias H, Wenger, Aaron M, Wilson, Melissa A, Zarate, Samantha, Zhu, Yiming, Zook, Justin M, Eichler, Evan E, O'Neill, Rachel J, Schatz, Michael C, Miga, Karen H, Makova, Kateryna D, Phillippy, Adam M

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Improved reference genome of Aedes aegypti informs arbovirus vector control von Matthews, BJ, Dudchenko, O, Kingan, SB, Koren, S, Antoshechkin, I, Crawford, JE, Glassford, WJ, Herre, M, Redmond, SN, Rose, NH, Weedall, GD, Wu, Y, Batra, SS, Brito-Sierra, CA, Buckingham, SD, Campbell, CL, Chan, S, Cox, E, Evans, BR, Fansiri, T, Filipović, I, Fontaine, A, Gloria-Soria, A, Hall, R, Joardar, VS, Jones, AK, Kay, RGG, Kodali, VK, Lee, J, Lycett, GJ, Mitchell, SN, Muehling, J, Murphy, MR, Omer, AD, Partridge, FA, Peluso, P, Aiden, AP, Ramasamy, V, Rašić, G, Roy, S, Saavedra-Rodriguez, K, Sharan, S, Sharma, A, Smith, ML, Turner, J, Weakley, AM, Zhao, Z, Akbari, OS, Black, WC, Cao, H, Darby, AC, Hill, CA, Johnston, JS, Murphy, TD, Raikhel, AS, Sattelle, DB, Sharakhov, IV, White, BJ, Zhao, L, Aiden, EL, Mann, RS, Lambrechts, L, Powell, JR, Sharakhova, MV, Tu, Z, Robertson, HM, McBride, CS, Hastie, AR, Korlach, J, Neafsey, DE, Phillippy, AM, Vosshall, LB

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The 15th Genomic Standards Consortium meeting von Schriml, Lynn, Mizrachi, Ilene, Sterk, Peter, Field, Dawn, Hirschman, Lynette, Tatusova, Tatiana, Sansone, Susanna, Gilbert, Jack, Schindel, David, Davies, Neil, Meyer, Chris, Meyer, Folker, Garrity, George, Proctor, Lita, Medema, M. H., Lan, Yemin, Klindworth, Anna, Glöckner, Frank Oliver, Korves, Tonia, Gonzalez, Antonia, Dwayndt, Peter, Göker, Markus, Johnston, Anjette, Pafilis, Evangelos, Schneider, Susanne, Baker, K., Parr, Cynthia, Sutton, G., Creasy, H. H., Kyrpides, Nikos, Wommack, K. Eric, Whetzel, Patricia L., Nasko, Daniel, Lapp, Hilmar, Fujisawa, Takamoto, Phillippy, Adam M., Kottman, Renzo, Blake, Judith A., Li, Junhua, Glass, Elizabeth M., ten Hoopen, Petra, Knight, Rob, Holmes, Susan, Huttenhower, Curtis, Salzberg, Steven L., Ma, Bing, White, Owen

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