The Landscape of long noncoding RNA classification von St. Laurent, Georges, Wahlestedt, Claes, Kapranov, Philipp

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Strategies to Annotate and Characterize Long Noncoding RNAs: Advantages and Pitfalls von Cao, Huifen, Wahlestedt, Claes, Kapranov, Philipp

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Hovlinc is a recently evolved class of ribozyme found in human lncRNA von Chen, Yue, Qi, Fei, Gao, Fan, Cao, Huifen, Xu, Dongyang, Salehi-Ashtiani, Kourosh, Kapranov, Philipp

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A CRISPR/Cas13-based approach demonstrates biological relevance of vlinc class of long non-coding RNAs in anticancer drug response von Xu, Dongyang, Cai, Ye, Tang, Lu, Han, Xueer, Gao, Fan, Cao, Huifen, Qi, Fei, Kapranov, Philipp

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Reverse-genetics studies of lncRNAs-what we have learnt and paths forward von Gao Fan, Cai Ye, Kapranov, Philipp, Xu Dongyang

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Complex genomic patterns of abasic sites in mammalian DNA revealed by a high-resolution SSiNGLe-AP method von Cai, Ye, Cao, Huifen, Wang, Fang, Zhang, Yufei, Kapranov, Philipp

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Methods to Analyze the Non-Coding RNA Interactome-Recent Advances and Challenges von Cao, Huifen, Kapranov, Philipp

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Genome-wide transcription and the implications for genomic organization von Gingeras, Thomas R, Kapranov, Philipp, Willingham, Aarron T

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Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation von Pastori, Chiara, Philipp Kapranov, Clara Penas, Veronica Peschansky, Claude-Henry Volmar, Jann N. Sarkaria, Amade Bregy, Ricardo Komotar, Georges St. Laurent, Nagi G. Ayad, Claes Wahlestedt

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Common occurrence of hotspots of single strand DNA breaks at transcriptional start sites von Cao, Huifen, Zhang, Yufei, Song, Tianrong, Xia, Lu, Cai, Ye, Kapranov, Philipp

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Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells von St Laurent, Georges, Shtokalo, Dmitry, Tackett, Michael R, Yang, Zhaoqing, Eremina, Tatyana, Wahlestedt, Claes, Urcuqui-Inchima, Silvio, Seilheimer, Bernd, McCaffrey, Timothy A, Kapranov, Philipp

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Evidence for widespread existence of functional novel and non-canonical human transcripts von Xu, Dongyang, Tang, Lu, Zhou, Junjun, Wang, Fang, Cao, Huifen, Huang, Yu, Kapranov, Philipp

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Editorial: Recent Progresses of Non-coding RNAs in Biological and Medical Research von Zheng, Yun, Kapranov, Philipp

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Dynamic Patterns of Mammalian Mitochondrial DNA Replication Uncovered Using SSiNGLe-5′ES von Xu, Dongyang, Luo, Lingcong, Huang, Yu, Lu, Meng, Tang, Lu, Diao, Yong, Kapranov, Philipp

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Evidence for Existence of Multiple Functional Human Small RNAs Derived from Transcripts of Protein-Coding Genes von Gao, Fan, Wang, Fang, Cao, Huifen, Chen, Yue, Diao, Yong, Kapranov, Philipp

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RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription von Kapranov, Philipp, Cheng, Jill, Dike, Sujit, Nix, David A., Duttagupta, Radharani, Willingham, Aarron T., Stadler, Peter F., Hertel, Jana, Hackermüller, Jörg, Hofacker, Ivo L., Bell, Ian, Cheung, Evelyn, Drenkow, Jorg, Dumais, Erica, Patel, Sandeep, Helt, Gregg, Ganesh, Madhavan, Ghosh, Srinka, Piccolboni, Antonio, Sementchenko, Victor, Tammana, Hari, Gingeras, Thomas R.

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A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster von Zhang, Xueqing, Lian, Zheng, Padden, Carolyn, Gerstein, Mark B., Rozowsky, Joel, Snyder, Michael, Gingeras, Thomas R., Kapranov, Philipp, Weissman, Sherman M., Newburger, Peter E.

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5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary von Khare, Tarang, Pai, Shraddha, Koncevicius, Karolis, Pal, Mrinal, Kriukiene, Edita, Liutkeviciute, Zita, Irimia, Manuel, Jia, Peixin, Ptak, Carolyn, Xia, Menghang, Tice, Raymond, Tochigi, Mamoru, Moréra, Solange, Nazarians, Anaies, Belsham, Denise, Wong, Albert H C, Blencowe, Benjamin J, Wang, Sun Chong, Kapranov, Philipp, Kustra, Rafal, Labrie, Viviane, Klimasauskas, Saulius, Petronis, Arturas

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Lessons from discovery of true ADAR RNA editing sites in a human cell line von Wang, Fang, Cao, Huifen, Xia, Qiu, Liu, Ziheng, Wang, Ming, Gao, Fan, Xu, Dongyang, Deng, Bolin, Diao, Yong, Kapranov, Philipp

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Genome-Wide Profiling of Endogenous Single-Stranded DNA Using the SSiNGLe-P1 Method von Xu, Dongyang, Huang, Yu, Luo, Lingcong, Tang, Lu, Lu, Meng, Cao, Huifen, Wang, Fang, Diao, Yong, Lyubchenko, Liudmila, Kapranov, Philipp

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