Leveraging known genomic variants to improve detection of variants, especially close-by Indels von Vo, Nam S, Phan, Vinhthuy

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Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities von Tran, Quang, Pham, Diem-Trang, Phan, Vinhthuy

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Enhancing active learning through collaboration between human teachers and generative AI von Pahi, Kritish, Hawlader, Shiplu, Hicks, Eric, Zaman, Alina, Phan, Vinhthuy

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Representing bacteria with unique genomic signatures von Pham, Diem-Trang, Phan, Vinhthuy

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How genome complexity can explain the difficulty of aligning reads to genomes von Phan, Vinhthuy, Gao, Shanshan, Tran, Quang, Vo, Nam S

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Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets von Roy, Sujoy, Heinrich, Kevin, Phan, Vinhthuy, Berry, Michael W, Homayouni, Ramin

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Assembling Reads Improves Taxonomic Classification of Species von Tran, Quang, Phan, Vinhthuy

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mDAG: a web-based tool for analyzing microarray data with multiple treatments von Phan, Vinhthuy T, Vo, Nam S, Sutter, Thomas R

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Alignment of short reads to multiple genomes using hashing von Tran, Quang, Phan, Vinhthuy

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Analysis of optimal alignments unfolds aligners' bias in existing variant profiles von Tran, Quang, Gao, Shanshan, Phan, Vinhthuy

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MetaBIDx: a new computational approach to bacteria identification in microbiomes von Pham, Diem-Trang, Phan, Vinhthuy

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Motif Tool Manager: a web-based platform for motif discovery von Phan, Vinhthuy

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Using partially ordered sets to represent and predict true patterns of gene response to treatments von Vo, Nam S, Phan, Vinhthuy

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Improving variant calling by incorporating known genetic variants into read alignment von Vo, Nam S, Phan, Vinhthuy

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Alignment-free methods for metagenomic profiling von Gao, Shanshan, Pham, Diem-Trang, Phan, Vinhthuy

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icHET: interactive visualization of cytoplasmic heteroplasmy von Phan, Vinhthuy, Pham, Diem-Trang, Melton, Caroline, Ramsey, Adam J, Daigle, Bernie J, Mandel, Jennifer R

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Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response von Vo, Nam S, Phan, Vinhthuy

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An integrated approach for SNP calling based on population of genomes von Vo, Nam S, Tran, Quang, Phan, Vinhthuy

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Exploiting the bootstrap method to analyze patterns of gene expression von Vo, Nam S, Phan, Vinhthuy

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A linear model for predicting performance of short-read aligners using genome complexity von Tran, Quang, Gao, Shanshan, Vo, Nam S, Phan, Vinhthuy

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