Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya von Phan, MVT, Agoti, CN, Munywoki, PK, Otieno, GP, Ngama, M, Kellam, P, Cotten, M, Nokes, DJ

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Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant von Agoti, CN, Phan, MVT, Munywoki, PK, Githinji, G, Medley, GF, Cane, PA, Kellam, P, Cotten, M, Nokes, DJ

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Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting von Cotten, M, Petrova, V, Phan, MVT, Rabaa, MA, Watson, SJ, Ong, SH, Kellam, P, Baker, S

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Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam von Munnink, BBO, Phan, MVT, Simmonds, P, Koopmans, MPG, Kellam, P, Van der Hoek, L, Cotten, M

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Virus genomes reveal factors that spread and sustained the Ebola epidemic von Dudas, G, Carvalho, LM, Bedford, T, Tatem, AJ, Baele, G, Faria, NR, Park, DJ, Ladner, JT, Arias, A, Asogun, D, Bielejec, F, Caddy, SL, Cotten, M, D'Ambrozio, J, Dellicour, S, Di Caro, A, Diclaro, JW, Duraffour, S, Elmore, MJ, Iii, LSF, Faye, O, Gilbert, ML, Gevao, SM, Gire, S, Gladden-Young, A, Gnirke, A, Goba, A, Grant, DS, Haagmans, BL, Hiscox, JA, Jah, U, Kugelman, JR, Liu, D, Lu, J, Malboeuf, CM, Mate, S, Matthews, DA, Matranga, CB, Meredith, LW, Qu, J, Quick, J, Pas, SD, Phan, MVT, Pollakis, G, Reusken, CB, Sanchez-Lockhart, M, Schaffner, SF, Schieffelin, JS, Sealfon, RS, Simon-Loriere, E, Smits, SL, Stoecker, K, Thorne, L, Tobin, EA, Vandi, MA, Watson, SJ, West, K, Whitmer, S, Wiley, MR, Winnicki, SM, Wohl, S, Wolfel, R, Yozwiak, NL, Andersen, KG, Blyden, SO, Bolay, F, Carroll, MW, Dahn, B, Diallo, B, Formenty, P, Fraser, C, Gao, GF, Garry, RF, Goodfellow, I, Gnther, S, Happi, CT, Holmes, EC, Kargbo, B, Keita, S, Kellam, P, Koopmans, MPG, Kuhn, JH, Loman, NJ, Magassouba, N, Naidoo, D, Nichol, ST, Nyenswah, T, Palacios, G, Pybus, OG, Sabeti, PC, Sall, A, Stroher, U, Wurie, I, Suchard, MA, Lemey, P, Rambaut, A

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Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis von Agoti, CN, Munywoki, PK, Phan, MVT, Otieno, JR, Kamau, E, Bett, A, Kombe, I, Githinji, G, Medley, GF, Cane, PA, Kellam, P, Cotten, M, Nokes, DJ

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A novel astrovirus-like RNA virus detected in human stool von Munnink, BBO, Cotten, M, Canuti, M, Deijs, M, Jebbink, MF, Van Hemert, FJ, Phan, MVT, Bakker, M, Farsani, SMJ, Kellam, P, Van der Hoek, L

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Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection von Phan, MVT, Pham, HA, Nguyen, VC, Munnink, BBO, Van der Hoek, L, Phuc, TM, Tue, NT, Bryant, JE, Baker, S, Thwaites, G, Woolhouse, M, Kellam, P, Rabaa, MA, Cotten, M

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Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases von Arias, A, Watson, SJ, Asogun, D, Tobin, EA, Lu, J, Phan, MVT, Jah, U, Wadoum, REG, Meredith, L, Thorne, L, Caddy, S, Tarawalie, A, Langat, P, Dudas, G, Faria, NR, Dellicour, S, Kamara, A, Kargbo, B, Kamara, BO, Gevao, S, Cooper, D, Newport, M, Horby, P, Dunning, J, Sahr, F, Brooks, T, Simpson, AJH, Groppelli, E, Liu, G, Mulakken, N, Rhodes, K, Akpablie, J, Yoti, Z, Lamunu, M, Vitto, E, Otim, P, Owilli, C, Boateng, I, Okoror, L, Omomoh, E, Oyakhilome, J, Omiunu, R, Yemisis, I, Adomeh, D, Ehikhiametalor, S, Akhilomen, P, Aire, C, Kurth, A, Cook, N, Baumann, J, Gabriel, M, Wölfel, R, Di Caro, A, Carroll, MW, Günther, S, Redd, J, Naidoo, D, Pybus, OG, Rambaut, A, Kellam, P, Goodfellow, I, Cotten, M

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Virus genomes reveal factors that spread and sustained the Ebola epidemic von Dudas, G, Carvalho, LM, Bedford, T, Tatem, AJ, Baele, G, Faria, NR, Park, DJ, Ladner, JT, Arias, A, Asogun, D, Bielejec, F, Caddy, SL, Cotten, M, D'Ambrozio, J, Dellicour, S, Di Caro, A, Diclaro, JW, Duraffour, S, Elmore, MJ, Fakoli, LS, Faye, O, Gilbert, ML, Gevao, SM, Gire, S, Gladden-Young, A, Gnirke, A, Goba, A, Grant, DS, Haagmans, BL, Hiscox, JA, Jah, U, Kugelman, JR, Liu, D, Lu, J, Malboeuf, CM, Mate, S, Matthews, DA, Matranga, CB, Meredith, LW, Qu, J, Quick, J, Pas, SD, Phan, MVT, Pollakis, G, Reusken, CB, Sanchez-Lockhart, M, Schaffner, SF, Schieffelin, JS, Sealfon, RS, Simon-Loriere, E, Smits, SL, Stoecker, K, Thorne, L, Tobin, EA, Vandi, MA, Watson, SJ, West, K, Whitmer, S, Wiley, MR, Winnicki, SM, Wohl, S, Wölfel, R, Yozwiak, NL, Andersen, KG, Blyden, SO, Bolay, F, Carroll, MW, Dahn, B, Diallo, B, Formenty, P, Fraser, C, Gao, GF, Garry, RF, Goodfellow, I, Günther, S, Happi, CT, Holmes, EC, Kargbo, B, Keïta, S, Kellam, P, Koopmans, MPG, Kuhn, JH, Loman, NJ, Magassouba, N, Naidoo, D, Nichol, ST, Nyenswah, T, Palacios, G, Pybus, OG, Sabeti, PC, Sall, A, Ströher, U, Wurie, I, Suchard, MA, Lemey, P, Rambaut, A

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Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases von Arias, A, Watson, SJ, Asogun, D, Tobin, EA, Lu, J, Phan, MVT, Jah, U, Wadoum, REG, Meredith, L, Thorne, L, Caddy, S, Tarawalie, A, Langat, P, Dudas, G, Faria, NR, Dellicour, S, Kamara, A, Kargbo, B, Kamara, BO, Gevao, S, Cooper, D, Newport, M, Horby, P, Dunning, J, Sahr, F, Brooks, T, Simpson, AJH, Groppelli, E, Liu, G, Mulakken, N, Rhodes, K, Akpablie, J, Yoti, Z, Lamunu, M, Vitto, E, Otim, P, Owilli, C, Boateng, I, Okoror, L, Omomoh, E, Oyakhilome, J, Omiunu, R, Yemisis, I, Adomeh, D, Ehikhiametalor, S, Akhilomen, P, Aire, C, Kurth, A, Cook, N, Baumann, J, Gabriel, M, Wölfel, R, Di Caro, A, Carroll, MW, Günther, S, Redd, J, Naidoo, D, Pybus, OG, Rambaut, A, Kellam, P, Goodfellow, I, Cotten, M

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Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection von Phan, MVT, Hong Anh, P, Van Cuong, N, Oude Munnink, B, Van der Hoek, L, Tran My, P, Ngo Tri, T, Bryant, J, Baker, S, Thwaites, G, Woolhouse, M, Kellam, P, Rabaa, M, Cotten, M

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Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic von Dudas, G, Carvalho, LM, Bedford, T, Tatem, A, Baele, G, Faria, N, Park, D, Ladner, J, Arias, A, Asogun, D, Bielejec, F, Caddy, S, Cotten, M, Dambrozio, J, Dellicour, S, Di Caro, A, Diclaro, J, Duraffour, S, Elmore, M, Fakoli, L, Gilbert, M, Gevao, S, Gire, S, Gladden-Young, A, Gnirke, A, Goba, A, Grant, D, Haagmans, B, Hiscox, J, Jah, U, Kargbo, B, Kugelman, J, Liu, D, Lu, J, Malboeuf, C, Mate, S, Matthews, D, Matranga, C, Meredith, L, Qu, J, Quick, J, Pas, S, Phan, MVT, Poliakis, G, Reusken, C, Sanchez-Lockhart, M, Schaffner, S, Schieffelin, J, Sealfon, R, Simon-Loriere, E, Smits, S, Stoecker, K, Thorne, L, Tobin, E, Vandi, M, Watson, S, West, K, Whitmer, S, Wiley, M, Winnicki, S, Wohl, S, Wölfel, R, Yozwiak, N, Andersen, K, Blyden, S, Bolay, F, Carroll, M, Dahn, B, Diallo, B, Formenty, P, Fraser, C, Gao, G, Garry, R, Goodfellow, I, Günther, S, Happi, C, Holmes, E, Kellam, P, Koopmans, MPG, Loman, N, Magassouba, N, Naidoo, D, Nichol, S, Nyenswah, T, Palacios, G, Pybus, O, Sabeti, P, Sall, A, Sakoba, K, Ströeher, U, Wurie, I, Suchard, M, Lemey, P, Rambaut, A

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