Perspective: Stochastic algorithms for chemical kinetics von Gillespie, Daniel T, Hellander, Andreas, Petzold, Linda R

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Functional neuronal circuitry and oscillatory dynamics in human brain organoids von Sharf, Tal, van der Molen, Tjitse, Glasauer, Stella M. K., Guzman, Elmer, Buccino, Alessio P., Luna, Gabriel, Cheng, Zhuowei, Audouard, Morgane, Ranasinghe, Kamalini G., Kudo, Kiwamu, Nagarajan, Srikantan S., Tovar, Kenneth R., Petzold, Linda R., Hierlemann, Andreas, Hansma, Paul K., Kosik, Kenneth S.

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Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development von Nowakowski, Tomasz J., Rani, Neha, Golkaram, Mahdi, Zhou, Hongjun R., Alvarado, Beatriz, Huch, Kylie, West, Jay A., Leyrat, Anne, Pollen, Alex A., Kriegstein, Arnold R., Petzold, Linda R., Kosik, Kenneth S.

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Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion von Golkaram, Mahdi, Hellander, Stefan, Drawert, Brian, Petzold, Linda R

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Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist von Drawert, Brian, Hellander, Andreas, Bales, Ben, Banerjee, Debjani, Bellesia, Giovanni, Daigle, Jr, Bernie J, Douglas, Geoffrey, Gu, Mengyuan, Gupta, Anand, Hellander, Stefan, Horuk, Chris, Nath, Dibyendu, Takkar, Aviral, Wu, Sheng, Lötstedt, Per, Krintz, Chandra, Petzold, Linda R

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Efficient step size selection for the tau-leaping simulation method von Cao, Yang, Gillespie, Daniel T., Petzold, Linda R.

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Ontogeny of Circadian Rhythms and Synchrony in the Suprachiasmatic Nucleus von Carmona-Alcocer, Vania, Abel, John H, Sun, Tao C, Petzold, Linda R, Doyle, 3rd, Francis J, Simms, Carrie L, Herzog, Erik D

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Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis von Banavar, Samhita P, Gomez, Carlos, Trogdon, Michael, Petzold, Linda R, Yi, Tau-Mu, Campàs, Otger

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The slow-scale stochastic simulation algorithm von Cao, Yang, Gillespie, Daniel T, Petzold, Linda R

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The effect of cell geometry on polarization in budding yeast von Trogdon, Michael, Drawert, Brian, Gomez, Carlos, Banavar, Samhita P, Yi, Tau-Mu, Campàs, Otger, Petzold, Linda R

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Transition on a Wing with Spanwise Varying Crossflow and Linear Stability Analysis von Petzold, R, Radespiel, R

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RT-Sort: An action potential propagation-based algorithm for real time spike detection and sorting with millisecond latencies von van der Molen, Tjitse, Lim, Max, Bartram, Julian, Cheng, Zhuowei, Robbins, Ash, Parks, David F, Petzold, Linda R, Hierlemann, Andreas, Haussler, David, Hansma, Paul K, Tovar, Kenneth R, Kosik, Kenneth S

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Control of neural systems at multiple scales using model-free, deep reinforcement learning von Mitchell, B. A., Petzold, L. R.

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Computational model of tranexamic acid on urokinase mediated fibrinolysis von Wu, Tie Bo, Orfeo, Thomas, Moore, Hunter B, Sumislawski, Joshua J, Cohen, Mitchell J, Petzold, Linda R

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Coordinating cell polarization and morphogenesis through mechanical feedback von Banavar, Samhita P, Trogdon, Michael, Drawert, Brian, Yi, Tau-Mu, Petzold, Linda R, Campàs, Otger

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neuropeptide speeds circadian entrainment by reducing intercellular synchrony von An, Sungwon, Harang, Rich, Meeker, Kirsten, Granados-Fuentes, Daniel, Tsai, Connie A, Mazuski, Cristina, Kim, Jihee, Doyle, 3rd, Francis J, Petzold, Linda R, Herzog, Erik D

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Functional network inference of the suprachiasmatic nucleus von Abel, John H., Meeker, Kirsten, Granados-Fuentes, Daniel, St. John, Peter C., Wang, Thomas J., Bales, Benjamin B., Doyle, Francis J., Herzog, Erik D., Petzold, Linda R.

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Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators von Jiang, Richard M, Wrede, Fredrik, Singh, Prashant, Hellander, Andreas, Petzold, Linda R

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Control over single-cell distribution of G1 lengths by WNT governs pluripotency von Jang, Jiwon, Han, Dasol, Golkaram, Mahdi, Audouard, Morgane, Liu, Guojing, Bridges, Daniel, Hellander, Stefan, Chialastri, Alex, Dey, Siddharth S, Petzold, Linda R, Kosik, Kenneth S

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Extracellular detection of neuronal coupling von Guzman, Elmer, Cheng, Zhuowei, Hansma, Paul K., Tovar, Kenneth R., Petzold, Linda R., Kosik, Kenneth S.

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