RESCUE: a validated Nanopore pipeline to classify bacteria through long-read, 16S-ITS-23S rRNA sequencing von Petrone, Joseph R, Rios Glusberger, Paula, George, Christian D, Milletich, Patricia L, Ahrens, Angelica P, Roesch, Luiz Fernando Wurdig, Triplett, Eric W

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Growth parameters of Liberibacter crescens suggest ammonium and phosphate as essential molecules in the Liberibacter-plant host interface von Cruz-Munoz, Maritsa, Munoz-Beristain, Alam, Petrone, Joseph R, Robinson, Matthew A, Triplett, Eric W

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Gut microbiome markers in subgroups of HLA class II genotyped infants signal future celiac disease in the general population: ABIS study von Milletich, Patricia L., Ahrens, Angelica P., Russell, Jordan T., Petrone, Joseph R., Berryman, Meghan A., Agardh, Daniel, Ludvigsson, Jonas F., Triplett, Eric W., Ludvigsson, Johnny

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Development of Chemically Defined Media Reveals Citrate as Preferred Carbon Source for Liberibacter Growth von Cruz-Munoz, Maritsa, Petrone, Joseph R, Cohn, Alexa R, Munoz-Beristain, Alam, Killiny, Nabil, Drew, Jennifer C, Triplett, Eric W

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Unamplified, Long-Read Metagenomic Sequencing Approach to Close Endosymbiont Genomes of Low-Biomass Insect Populations von Petrone, Joseph R, Muñoz-Beristain, Alam, Glusberger, Paula Rios, Russell, Jordan T, Triplett, Eric W

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Infant microbes and metabolites point to childhood neurodevelopmental disorders von Ahrens, Angelica P., Hyötyläinen, Tuulia, Petrone, Joseph R., Igelström, Kajsa, George, Christian D., Garrett, Timothy J., Orešič, Matej, Triplett, Eric W., Ludvigsson, Johnny

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Autoimmune-associated genetics impact probiotic colonization of the infant gut von Berryman, Meghan A., Milletich, Patricia L., Petrone, Joseph R., Roesch, Luiz FW, Ilonen, Jorma, Triplett, Eric W., Ludvigsson, Johnny

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Whole genome analysis of spontaneous antimicrobial resistance in Liberibacter crescens suggests long-term efficacy for antimicrobial treatment of citrus greening disease von Rios Glusberger, Paula, Russell, Jordan T., Cohn, Alexa R., Petrone, Joseph R., Lai, Kin-Kwan, Triplett, Eric W.

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The ATCC genome portal: 3,938 authenticated microbial reference genomes von Nguyen, Scott V, Puthuveetil, Nikhita P, Petrone, Joseph R, Kirkland, Jade L, Gaffney, Kaitlyn, Tabron, Corina L, Wax, Noah, Duncan, James, King, Stephen, Marlow, Robert, Reese, Amy L, Yarmosh, David A, McConnell, Hannah H, Fernandes, Ana S, Bagnoli, John, Benton, Briana, Jacobs, Jonathan L

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Foliar Phosphate Applications Influence Organic Acid Composition in the Citrus Phloem and Could Reduce Huanglongbing Disease by Limiting C Las Titers von Glusberger, Paula Rios, Petrone, Joseph R., Muñoz-Beristain, Alam, Li, Jinyun, Wang, Nian, Guha, Anirban, Vincent, Christopher, Killiny, Nabil, Triplett, Eric W.

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CANDIDATUS LIBERIBACTER PLANT DISEASE CONTROL BY APPLICATION OF GLYPHOSATE von TRIPLETT, Eric W, PETRONE, Joseph R

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Real-time public health communication of local SARS-CoV-2 genomic epidemiology von Kalinich, Chaney C., Jensen, Cole G., Neugebauer, Peter, Petrone, Mary E., Pena-Hernandez, Mario, Ott, Isabel M., Wyllie, Anne L., Alpert, Tara, Vogels, Chantal B. F., Fauver, Joseph R., Grubaugh, Nathan D., Brito, Anderson F.

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Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity von Lucas, Carolina, Vogels, Chantal B. F., Yildirim, Inci, Rothman, Jessica E., Lu, Peiwen, Monteiro, Valter, Gehlhausen, Jeff R., Campbell, Melissa, Silva, Julio, Tabachnikova, Alexandra, Peña-Hernandez, Mario A., Muenker, M. Catherine, Breban, Mallery I., Fauver, Joseph R., Mohanty, Subhasis, Huang, Jiefang, Shaw, Albert C., Ko, Albert I., Omer, Saad B., Grubaugh, Nathan D., Iwasaki, Akiko

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Influence of genotype and perioral musculature on maxillary and mandibular development von Hansen, Sarah E, Petrone, Joseph F A, Burnheimer, John M, Vieira, Alexandre R

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Longitudinal analyses reveal immunological misfiring in severe COVID-19 von Lucas, Carolina, Wong, Patrick, Klein, Jon, Castro, Tiago B. R., Silva, Julio, Sundaram, Maria, Ellingson, Mallory K., Mao, Tianyang, Oh, Ji Eun, Israelow, Benjamin, Takahashi, Takehiro, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Mohanty, Subhasis, Wang, Haowei, Wyllie, Anne L., Vogels, Chantal B. F., Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M., Moore, Adam J., Muenker, M. Catherine, Fournier, John B., Campbell, Melissa, Odio, Camila D., Casanovas-Massana, Arnau, Herbst, Roy, Shaw, Albert C., Medzhitov, Ruslan, Schulz, Wade L., Grubaugh, Nathan D., Dela Cruz, Charles, Farhadian, Shelli, Ko, Albert I., Omer, Saad B., Iwasaki, Akiko

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Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States von Fauver, Joseph R., Petrone, Mary E., Hodcroft, Emma B., Shioda, Kayoko, Ehrlich, Hanna Y., Watts, Alexander G., Vogels, Chantal B.F., Brito, Anderson F., Alpert, Tara, Muyombwe, Anthony, Razeq, Jafar, Downing, Randy, Cheemarla, Nagarjuna R., Wyllie, Anne L., Kalinich, Chaney C., Ott, Isabel M., Quick, Joshua, Loman, Nicholas J., Neugebauer, Karla M., Greninger, Alexander L., Jerome, Keith R., Roychoudhury, Pavitra, Xie, Hong, Shrestha, Lasata, Huang, Meei-Li, Pitzer, Virginia E., Iwasaki, Akiko, Omer, Saad B., Khan, Kamran, Bogoch, Isaac I., Martinello, Richard A., Foxman, Ellen F., Landry, Marie L., Neher, Richard A., Ko, Albert I., Grubaugh, Nathan D.

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A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice von Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B F, Gomez-Calvo, Maria Luisa, Fedorova, Olga, Breban, Mallery I, Menasche, Bridget L, Dong, Huiping, Linehan, Melissa, Wilen, Craig B, Landry, Marie L, Grubaugh, Nathan D, Pyle, Anna M, Iwasaki, Akiko

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Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets von Vogels, Chantal B. F., Brito, Anderson F., Wyllie, Anne L., Fauver, Joseph R., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Casanovas-Massana, Arnau, Catherine Muenker, M., Moore, Adam J., Klein, Jonathan, Lu, Peiwen, Lu-Culligan, Alice, Jiang, Xiaodong, Kim, Daniel J., Kudo, Eriko, Mao, Tianyang, Moriyama, Miyu, Oh, Ji Eun, Park, Annsea, Silva, Julio, Song, Eric, Takahashi, Takehiro, Taura, Manabu, Tokuyama, Maria, Venkataraman, Arvind, Weizman, Orr-El, Wong, Patrick, Yang, Yexin, Cheemarla, Nagarjuna R., White, Elizabeth B., Lapidus, Sarah, Earnest, Rebecca, Geng, Bertie, Vijayakumar, Pavithra, Odio, Camila, Fournier, John, Bermejo, Santos, Farhadian, Shelli, Dela Cruz, Charles S., Iwasaki, Akiko, Ko, Albert I., Landry, Marie L., Foxman, Ellen F., Grubaugh, Nathan D.

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Identification of Late-Onset Hypogonadism in Middle-Aged and Elderly Men von Wu, Frederick C.W, Tajar, Abdelouahid, Beynon, Jennifer M, Pye, Stephen R, Silman, Alan J, Finn, Joseph D, O'Neill, Terence W, Bartfai, Gyorgy, Casanueva, Felipe F, Forti, Gianni, Giwercman, Aleksander, Han, Thang S, Kula, Krzysztof, Lean, Michael E.J, Pendleton, Neil, Punab, Margus, Boonen, Steven, Vanderschueren, Dirk, Labrie, Fernand, Huhtaniemi, Ilpo T

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus von Vogels, Chantal B F, Hill, Verity, Breban, Mallery I, Chaguza, Chrispin, Paul, Lauren M, Sodeinde, Afeez, Taylor-Salmon, Emma, Ott, Isabel M, Petrone, Mary E, Dijk, Dennis, Jonges, Marcel, Welkers, Matthijs R A, Locksmith, Timothy, Dong, Yibo, Tarigopula, Namratha, Tekin, Omer, Schmedes, Sarah, Bunch, Sylvia, Cano, Natalia, Jaber, Rayah, Panzera, Charles, Stryker, Ian, Vergara, Julieta, Zimler, Rebecca, Kopp, Edgar, Heberlein, Lea, Herzog, Kaylee S, Fauver, Joseph R, Morrison, Andrea M, Michael, Scott F, Grubaugh, Nathan D

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