ER-mitochondria tethering by PDZD8 regulates Ca2+ dynamics in mammalian neurons von Hirabayashi, Yusuke, Kwon, Seok-Kyu, Paek, Hunki, Pernice, Wolfgang M., Paul, Maëla A., Lee, Jinoh, Erfani, Parsa, Raczkowski, Ashleigh, Petrey, Donald S., Pon, Liza A., Polleux, Franck

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Structure-based prediction of ligand–protein interactions on a genome-wide scale von Hwang, Howook, Dey, Fabian, Petrey, Donald, Honig, Barry

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PrePPI: a structure-informed database of protein-protein interactions von Zhang, Qiangfeng Cliff, Petrey, Donald, Garzón, José Ignacio, Deng, Lei, Honig, Barry

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Structure-based prediction of protein–protein interactions on a genome-wide scale von Zhang, Qiangfeng Cliff, Petrey, Donald, Deng, Lei, Qiang, Li, Shi, Yu, Thu, Chan Aye, Bisikirska, Brygida, Lefebvre, Celine, Accili, Domenico, Hunter, Tony, Maniatis, Tom, Califano, Andrea, Honig, Barry

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Structural Bioinformatics of the Interactome von Petrey, Donald, Honig, Barry

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Protein interface conservation across structure space von Zhang, Qiangfeng Cliff, Petrey, Donald, Norel, Raquel, Honig, Barry H

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Genetic Drivers of Kidney Defects in the DiGeorge Syndrome von Lopez-Rivera, Esther, Liu, Yangfan P, Verbitsky, Miguel, Anderson, Blair R, Capone, Valentina P, Otto, Edgar A, Yan, Zhonghai, Mitrotti, Adele, Martino, Jeremiah, Steers, Nicholas J, Fasel, David A, Vukojevic, Katarina, Deng, Rong, Racedo, Silvia E, Liu, Qingxue, Werth, Max, Westland, Rik, Vivante, Asaf, Makar, Gabriel S, Bodria, Monica, Sampson, Matthew G, Gillies, Christopher E, Vega-Warner, Virginia, Maiorana, Mariarosa, Petrey, Donald S, Honig, Barry, Lozanovski, Vladimir J, Salomon, Rémi, Heidet, Laurence, Carpentier, Wassila, Gaillard, Dominique, Carrea, Alba, Gesualdo, Loreto, Cusi, Daniele, Izzi, Claudia, Scolari, Francesco, van Wijk, Joanna A.E, Arapovic, Adela, Saraga-Babic, Mirna, Saraga, Marijan, Kunac, Nenad, Samii, Ali, McDonald-McGinn, Donna M, Crowley, Terrence B, Zackai, Elaine H, Drozdz, Dorota, Miklaszewska, Monika, Tkaczyk, Marcin, Sikora, Przemyslaw, Szczepanska, Maria, Mizerska-Wasiak, Malgorzata, Krzemien, Grazyna, Szmigielska, Agnieszka, Zaniew, Marcin, Darlow, John M, Puri, Prem, Barton, David, Casolari, Emilio, Furth, Susan L, Warady, Bradley A, Gucev, Zoran, Hakonarson, Hakon, Flogelova, Hana, Tasic, Velibor, Latos-Bielenska, Anna, Materna-Kiryluk, Anna, Allegri, Landino, Wong, Craig S, Drummond, Iain A, D’Agati, Vivette, Imamoto, Akira, Barasch, Jonathan M, Hildebrandt, Friedhelm, Kiryluk, Krzysztof, Lifton, Richard P, Morrow, Bernice E, Jeanpierre, Cecile, Papaioannou, Virginia E, Ghiggeri, Gian Marco, Gharavi, Ali G, Katsanis, Nicholas, Sanna-Cherchi, Simone

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Structural relationships among proteins with different global topologies and their implications for function annotation strategies von Petrey, Donald, Fischer, Markus, Honig, Barry

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A computational interactome and functional annotation for the human proteome von Garzón, José Ignacio, Deng, Lei, Murray, Diana, Shapira, Sagi, Petrey, Donald, Honig, Barry

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GRASP2: Visualization, Surface Properties, and Electrostatics of Macromolecular Structures and Sequences von Petrey, Donald, Honig, Barry

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Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis von Ganapathi, Mythily, Argyriou, Loukas, Martínez-Azorín, Francisco, Morlot, Susanne, Yigit, Gökhan, Lee, Teresa M., Auber, Bernd, von Gise, Alexander, Petrey, Donald S., Thiele, Holger, Cyganek, Lukas, Sabater-Molina, María, Ahimaz, Priyanka, Cabezas-Herrera, Juan, Sorlí-García, Moisés, Zibat, Arne, Siegelin, Markus D., Burfeind, Peter, Buchovecky, Christie M., Hasenfuss, Gerd, Honig, Barry, Li, Yun, Iglesias, Alejandro D., Wollnik, Bernd

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De novo missense variants in PPP2R5D are associated with intellectual disability, macrocephaly, hypotonia, and autism von Shang, Linshan, Henderson, Lindsay B., Cho, Megan T., Petrey, Donald S., Fong, Chin-To, Haude, Katrina M., Shur, Natasha, Lundberg, Julie, Hauser, Natalie, Carmichael, Jason, Innis, Jeffrey, Schuette, Jane, Wu, Yvonne W., Asaikar, Shailesh, Pearson, Margaret, Folk, Leandra, Retterer, Kyle, Monaghan, Kristin G., Chung, Wendy K.

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Predicting peptide-mediated interactions on a genome-wide scale von Chen, T Scott, Petrey, Donald, Garzon, Jose Ignacio, Honig, Barry

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ER-mitochondria tethering by PDZD8 regulates Ca 2+ dynamics in mammalian neurons von Hirabayashi, Yusuke, Kwon, Seok-Kyu, Paek, Hunki, Pernice, Wolfgang M, Paul, Maëla A, Lee, Jinoh, Erfani, Parsa, Raczkowski, Ashleigh, Petrey, Donald S, Pon, Liza A, Polleux, Franck

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The WD40 domain is required for LRRK2 neurotoxicity von Jorgensen, Nathan D, Peng, Yong, Ho, Cherry C-Y, Rideout, Hardy J, Petrey, Donald, Liu, Peng, Dauer, William T

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Predicting transmembrane beta‐barrels in proteomes von Bigelow, Henry R., Petrey, Donald S., Liu, Jinfeng, Przybylski, Dariusz, Rost, Burkhard

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Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling von Petrey, Donald, Xiang, Zhexin, Tang, Christopher L., Xie, Lei, Gimpelev, Marina, Mitros, Therese, Soto, Cinque S., Goldsmith-Fischman, Sharon, Kernytsky, Andrew, Schlessinger, Avner, Koh, Ingrid Y.Y., Alexov, Emil, Honig, Barry

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Using structure to explore the sequence alignment space of remote homologs von Kuziemko, Andrew, Honig, Barry, Petrey, Donald

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Integrating 3D structural information into systems biology von Murray, Diana, Petrey, Donald, Honig, Barry

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ZEPPI: Proteome-scale sequence-based evaluation of protein-protein interaction models von Zhao, Haiqing, Petrey, Donald, Murray, Diana, Honig, Barry

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