Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C) von de Laat, Wouter, Simonis, Marieke, Klous, Petra, Splinter, Erik, Moshkin, Yuri, Willemsen, Rob, de Wit, Elzo, van Steensel, Bas

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Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping von de Vree, Paula J P, de Wit, Elzo, Yilmaz, Mehmet, van de Heijning, Monique, Klous, Petra, Verstegen, Marjon J A M, Wan, Yi, Teunissen, Hans, Krijger, Peter H L, Geeven, Geert, Eijk, Paul P, Sie, Daoud, Ylstra, Bauke, Hulsman, Lorette O M, van Dooren, Marieke F, van Zutven, Laura J C M, van den Ouweland, Ans, Verbeek, Sjef, van Dijk, Ko Willems, Cornelissen, Marion, Das, Atze T, Berkhout, Ben, Sikkema-Raddatz, Birgit, van den Berg, Eva, van der Vlies, Pieter, Weening, Desiree, den Dunnen, Johan T, Matusiak, Magdalena, Lamkanfi, Mohamed, Ligtenberg, Marjolijn J L, ter Brugge, Petra, Jonkers, Jos, Foekens, John A, Martens, John W, van der Luijt, Rob, van Amstel, Hans Kristian Ploos, van Min, Max, Splinter, Erik, de Laat, Wouter

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Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation von Splinter, Erik, de Wit, Elzo, van de Werken, Harmen J.G., Klous, Petra, de Laat, Wouter

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Robust 4C-seq data analysis to screen for regulatory DNA interactions von van de Werken, Harmen J G, Landan, Gilad, Holwerda, Sjoerd J B, Hoichman, Michael, Klous, Petra, Chachik, Ran, Splinter, Erik, Valdes-Quezada, Christian, Öz, Yuva, Bouwman, Britta A M, Verstegen, Marjon J A M, de Wit, Elzo, Tanay, Amos, de Laat, Wouter

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Quantitative analysis of chromosome conformation capture assays (3C-qPCR) von de Laat, Wouter, Forné, Thierry, Hagège, Hélène, Klous, Petra, Braem, Caroline, Splinter, Erik, Dekker, Job, Cathala, Guy

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The pluripotent genome in three dimensions is shaped around pluripotency factors von de Wit, Elzo, Bouwman, Britta A. M., Zhu, Yun, Klous, Petra, Splinter, Erik, Verstegen, Marjon J. A. M., Krijger, Peter H. L., Festuccia, Nicola, Nora, Elphège P., Welling, Maaike, Heard, Edith, Geijsen, Niels, Poot, Raymond A., Chambers, Ian, de Laat, Wouter

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A common genetic variant within SCN10A modulates cardiac SCN5A expression von van den Boogaard, Malou, Smemo, Scott, Burnicka-Turek, Ozanna, Arnolds, David E, van de Werken, Harmen J G, Klous, Petra, McKean, David, Muehlschlegel, Jochen D, Moosmann, Julia, Toka, Okan, Yang, Xinan H, Koopmann, Tamara T, Adriaens, Michiel E, Bezzina, Connie R, de Laat, Wouter, Seidman, Christine, Seidman, J G, Christoffels, Vincent M, Nobrega, Marcelo A, Barnett, Phil, Moskowitz, Ivan P

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Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription von Palstra, Robert-Jan, Simonis, Marieke, Klous, Petra, Brasset, Emilie, Eijkelkamp, Bart, de Laat, Wouter

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High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology von de Laat, Wouter, Simonis, Marieke, Klous, Petra, Homminga, Irene, Galjaard, Robert-Jan, Rijkers, Erik-Jan, Grosveld, Frank, Meijerink, Jules P P

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Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region von Noordermeer, Daan, Branco, Miguel R, Splinter, Erik, Klous, Petra, van Ijcken, Wilfred, Swagemakers, Sigrid, Koutsourakis, Manousos, van der Spek, Peter, Pombo, Ana, de Laat, Wouter

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Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations von Van Schil, Kristof, Naessens, Sarah, Van de Sompele, Stijn, Carron, Marjolein, Aslanidis, Alexander, Van Cauwenbergh, Caroline, Mayer, Anja K, Van Heetvelde, Mattias, Bauwens, Miriam, Verdin, Hannah, Coppieters, Frauke, Greenberg, Michael E, Yang, Marty G, Karlstetter, Marcus, Langmann, Thomas, De Preter, Katleen, Kohl, Susanne, Cherry, Timothy J, Leroy, Bart P, De Baere, Elfride

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CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus von Splinter, Erik, Heath, Helen, Kooren, Jurgen, Palstra, Robert-Jan, Klous, Petra, Grosveld, Frank, Galjart, Niels, de Laat, Wouter

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The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA von Splinter, Erik, de Wit, Elzo, Nora, Elphège P, Klous, Petra, van de Werken, Harmen J G, Zhu, Yun, Kaaij, Lucas J T, van Ijcken, Wilfred, Gribnau, Joost, Heard, Edith, de Laat, Wouter

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Variegated gene expression caused by cell-specific long-range DNA interactions von Noordermeer, Daan, de Laat, Wouter, de Wit, Elzo, Klous, Petra, van de Werken, Harmen, Simonis, Marieke, Lopez-Jones, Melissa, Eussen, Bert, de Klein, Annelies, Singer, Robert H

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3D chromatin conformation correlates with replication timing and is conserved in resting cells von Moindrot, Benoit, Audit, Benjamin, Klous, Petra, Baker, Antoine, Thermes, Claude, de Laat, Wouter, Bouvet, Philippe, Mongelard, Fabien, Arneodo, Alain

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4C Technology: Protocols and Data Analysis von van de Werken, Harmen J.G., de Vree, Paula J.P., Splinter, Erik, Holwerda, Sjoerd J.B., Klous, Petra, de Wit, Elzo, de Laat, Wouter

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Correction: Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations von Van Schil, Kristof, Naessens, Sarah, Van de Sompele, Stijn, Carron, Marjolein, Aslanidis, Alexander, Van Cauwenbergh, Caroline, Mayer, Anja K., Van Heetvelde, Mattias, Bauwens, Miriam, Verdin, Hannah, Coppieters, Frauke, Greenberg, Michael E., Yang, Marty G., Karlstetter, Marcus, Langmann, Thomas, De Preter, Katleen, Kohl, Susanne, Cherry, Timothy J., Leroy, Bart P., De Baere, Elfride

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Integrated Transcript and Genome Analyses Reveal NKX2-1 and MEF2C as Potential Oncogenes in T Cell Acute Lymphoblastic Leukemia von Homminga, Irene, Pieters, Rob, Langerak, Anton W., de Rooi, Johan J., Stubbs, Andrew, Verstegen, Monique, Vuerhard, Maartje, Buijs-Gladdines, Jessica, Kooi, Clarissa, Klous, Petra, van Vlierberghe, Pieter, Ferrando, Adolfo A., Cayuela, Jean Michel, Verhaaf, Brenda, Beverloo, H. Berna, Horstmann, Martin, de Haas, Valerie, Wiekmeijer, Anna-Sophia, Pike-Overzet, Karin, Staal, Frank J.T., de Laat, Wouter, Soulier, Jean, Sigaux, Francois, Meijerink, Jules P.P.

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Targeted locus amplification to detect molecular markers in mantle cell and follicular lymphoma von Genuardi, Elisa, Klous, Petra, Mantoan, Barbara, Drandi, Daniela, Ferrante, Martina, Cavallo, Federica, Alessandria, Beatrice, Dogliotti, Irene, Grimaldi, Daniele, Ragaini, Simone, Clerico, Michele, Lo Schirico, Mariella, Saraci, Elona, Yilmaz, Mehmet, Zaccaria, Gian Maria, Cortelazzo, Sergio, Vitolo, Umberto, Luminari, Stefano, Federico, Massimo, Boccadoro, Mario, Min, Max, Splinter, Erik, Ladetto, Marco, Ferrero, Simone

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Targeted Locus Amplification (TLA): A Novel Next Generation Sequencing (NGS) Technology to Detect New Molecular Markers and Monitoring Minimal Residual Disease (MRD) in Mantle Cell... von Genuardi, Elisa, Klous, Petra, Drandi, Daniela, Mantoan, Barbara, Monitillo, Luigia, Daniela, Barbero, Yilmaz, Mehmet, Cattellino, Fabio, Vasta, Marika, Furia, Federica, Zaccaria, Gian Maria, Cavallo, Federica, Cortelazzo, Sergio, Vitolo, Umberto, Luminari, Stefano, Federico, Massimo, Boccadoro, Mario, Splinter, Erik, Ladetto, Marco, Ferrero, Simone

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