Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data von Aßhauer, Kathrin P, Wemheuer, Bernd, Daniel, Rolf, Meinicke, Peter

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Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences von Wemheuer, Franziska, Taylor, Jessica A, Daniel, Rolf, Johnston, Emma, Meinicke, Peter, Thomas, Torsten, Wemheuer, Bernd

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Metabolic priming by a secreted fungal effector von Djamei, Armin, Schipper, Kerstin, Rabe, Franziska, Ghosh, Anupama, Vincon, Volker, Kahnt, Jörg, Osorio, Sonia, Tohge, Takayuki, Fernie, Alisdair R., Feussner, Ivo, Feussner, Kirstin, Meinicke, Peter, Stierhof, York-Dieter, Schwarz, Heinz, Macek, Boris, Mann, Matthias, Kahmann, Regine

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UProC: tools for ultra-fast protein domain classification von Meinicke, Peter

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How to normalize metatranscriptomic count data for differential expression analysis von Klingenberg, Heiner, Meinicke, Peter

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UFO: a web server for ultra-fast functional profiling of whole genome protein sequences von Meinicke, Peter

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Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models von Waack, Stephan, Keller, Oliver, Asper, Roman, Brodag, Thomas, Damm, Carsten, Fricke, Wolfgang Florian, Surovcik, Katharina, Meinicke, Peter, Merkl, Rainer

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Meta-analysis of pathway enrichment: combining independent and dependent omics data sets von Kaever, Alexander, Landesfeind, Manuel, Feussner, Kirstin, Morgenstern, Burkhard, Feussner, Ivo, Meinicke, Peter

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MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data von Kaever, Alexander, Landesfeind, Manuel, Feussner, Kirstin, Mosblech, Alina, Heilmann, Ingo, Morgenstern, Burkhard, Feussner, Ivo, Meinicke, Peter

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Treephyler: fast taxonomic profiling of metagenomes von Schreiber, Fabian, Gumrich, Peter, Daniel, Rolf, Meinicke, Peter

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Protein signature-based estimation of metagenomic abundances including all domains of life and viruses von Klingenberg, Heiner, Aßhauer, Kathrin Petra, Lingner, Thomas, Meinicke, Peter

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Word correlation matrices for protein sequence analysis and remote homology detection von Lingner, Thomas, Meinicke, Peter

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Gene prediction in metagenomic fragments: a large scale machine learning approach von Hoff, Katharina J, Tech, Maike, Lingner, Thomas, Daniel, Rolf, Morgenstern, Burkhard, Meinicke, Peter

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MarVis: a tool for clustering and visualization of metabolic biomarkers von Kaever, Alexander, Lingner, Thomas, Feussner, Kirstin, Göbel, Cornelia, Feussner, Ivo, Meinicke, Peter

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Exploring neighborhoods in the metagenome universe von Aßhauer, Kathrin P, Klingenberg, Heiner, Lingner, Thomas, Meinicke, Peter

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Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites von Meinicke, Peter, Tech, Maike, Morgenstern, Burkhard, Merkl, Rainer

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An unsupervised classification scheme for improving predictions of prokaryotic TIS von Tech, Maike, Meinicke, Peter

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Predicting phenotypic traits of prokaryotes from protein domain frequencies von Lingner, Thomas, Mühlhausen, Stefanie, Gabaldón, Toni, Notredame, Cedric, Meinicke, Peter

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Predicting the functional repertoire of an organism from unassembled RNA-seq data von Landesfeind, Manuel, Meinicke, Peter

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Integrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software von Landesfeind, Manuel, Kaever, Alexander, Feussner, Kirstin, Thurow, Corinna, Gatz, Christiane, Feussner, Ivo, Meinicke, Peter

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