Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2 von Specht, Harrison, Emmott, Edward, Petelski, Aleksandra A., Huffman, R. Gray, Perlman, David H., Serra, Marco, Kharchenko, Peter, Koller, Antonius, Slavov, Nikolai

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Functional Role of Autophagy-Mediated Proteome Remodeling in Cell Survival Signaling and Innate Immunity von Mathew, Robin, Khor, Sinan, Hackett, Sean R., Rabinowitz, Joshua D., Perlman, David H., White, Eileen

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The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development von Chen, Xiao, Bracht, John R., Goldman, Aaron David, Dolzhenko, Egor, Clay, Derek M., Swart, Estienne C., Perlman, David H., Doak, Thomas G., Stuart, Andrew, Amemiya, Chris T., Sebra, Robert P., Landweber, Laura F.

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Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments von Gatto, Laurent, Aebersold, Ruedi, Cox, Juergen, Demichev, Vadim, Derks, Jason, Emmott, Edward, Franks, Alexander M., Ivanov, Alexander R., Kelly, Ryan T., Khoury, Luke, Leduc, Andrew, MacCoss, Michael J., Nemes, Peter, Perlman, David H., Petelski, Aleksandra A., Rose, Christopher M., Schoof, Erwin M., Van Eyk, Jennifer, Vanderaa, Christophe, Yates, John R., Slavov, Nikolai

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Transmembrane domain of surface-exposed outer membrane lipoprotein RcsF is threaded through the lumen of β-barrel proteins von Konovalova, Anna, Perlman, David H, Cowles, Charles E, Silhavy, Thomas J

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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers von Lau, Maggie C. Y., Kieft, Thomas L., Kuloyo, Olukayode, Linage-Alvarez, Borja, van Heerden, Esta, Lindsay, Melody R., Magnabosco, Cara, Wang, Wei, Wiggins, Jessica B., Guo, Ling, Perlman, David H., Kyin, Saw, Shwe, Henry H., Harris, Rachel L., Oh, Youmi, Yi, Min Joo, Purtschert, Roland, Slater, Greg F., Ono, Shuhei, Wei, Siwen, Li, Long, Lollar, Barbara Sherwood, Onstott, Tullis C.

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Detection of cell–cell interactions via photocatalytic cell tagging von Oslund, Rob C., Reyes-Robles, Tamara, White, Cory H., Tomlinson, Jake H., Crotty, Kelly A., Bowman, Edward P., Chang, Dan, Peterson, Vanessa M., Li, Lixia, Frutos, Silvia, Vila-Perelló, Miquel, Vlerick, David, Cromie, Karen, Perlman, David H., Ingale, Sampat, Hara, Samantha D. O’, Roberts, Lee R., Piizzi, Grazia, Hett, Erik C., Hazuda, Daria J., Fadeyi, Olugbeminiyi O.

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Regulation of Yeast Pyruvate Kinase by Ultrasensitive Allostery Independent of Phosphorylation von Xu, Yi-Fan, Zhao, Xin, Glass, David S., Absalan, Farnaz, Perlman, David H., Broach, James R., Rabinowitz, Joshua D.

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Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite von Cobbold, Simon A., Santos, Joana M., Ochoa, Alejandro, Perlman, David H., Llinás, Manuel

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Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome von Oberstein, Adam, Perlman, David H., Shenk, Thomas, Terry, Laura J.

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Bisphosphoglycerate mutase controls serine pathway flux via 3-phosphoglycerate von Oslund, Rob C, Su, Xiaoyang, Haugbro, Michael, Kee, Jung-Min, Esposito, Mark, David, Yael, Wang, Boyuan, Ge, Eva, Perlman, David H, Kang, Yibin, Muir, Tom W, Rabinowitz, Joshua D

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Efficient Retrograde Transport of Pseudorabies Virus within Neurons Requires Local Protein Synthesis in Axons von Koyuncu, Orkide O., Perlman, David H., Enquist, Lynn W.

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Mitotic Control of Planar Cell Polarity by Polo-like Kinase 1 von Shrestha, Rezma, Little, Katherine A., Tamayo, Joel V., Li, Wenyang, Perlman, David H., Devenport, Danelle

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Kinetic Flux Profiling Elucidates Two Independent Acetyl-CoA Biosynthetic Pathways in Plasmodium falciparum von Cobbold, Simon A., Vaughan, Ashley M., Lewis, Ian A., Painter, Heather J., Camargo, Nelly, Perlman, David H., Fishbaugher, Matthew, Healer, Julie, Cowman, Alan F., Kappe, Stefan H.I., Llinás, Manuel

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ChelomEx: Isotope-Assisted Discovery of Metal Chelates in Complex Media Using High-Resolution LC-MS von Baars, Oliver, Morel, François M. M, Perlman, David H

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Multiplexed single-cell proteomics using SCoPE2 von Petelski, Aleksandra A., Emmott, Edward, Leduc, Andrew, Huffman, R. Gray, Specht, Harrison, Perlman, David H., Slavov, Nikolai

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Immune versus thrombotic stimulation of platelets differentially regulates signalling pathways, intracellular protein-protein interactions, and α-granule release von Rex, Sybille, Beaulieu, Lea M., Perlman, David H., Vitseva, Olga, Blair, Price S., McComb, Mark E., Costello, Catherine E., Freedman, Jane E.

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Amyloidogenic and Associated Proteins in Systemic Amyloidosis Proteome of Adipose Tissue von Lavatelli, Francesca, Perlman, David H., Spencer, Brian, Prokaeva, Tatiana, McComb, Mark E., Théberge, Roger, Connors, Lawreen H., Bellotti, Vittorio, Seldin, David C., Merlini, Giampaolo, Skinner, Martha, Costello, Catherine E.

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Regulation of Hepadnavirus Reverse Transcription by Dynamic Nucleocapsid Phosphorylation von BASAGOUDANAVAR, Suresh H, PERLMAN, David H, JIANMING HU

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Systems-level analysis of mechanisms regulating yeast metabolic flux von Hackett, Sean R., Zanotelli, Vito R. T., Xu, Wenxin, Goya, Jonathan, Park, Junyoung O., Perlman, David H., Gibney, Patrick A., Botstein, David, Storey, John D., Rabinowitz, Joshua D.

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