RAbHIT: R Antibody Haplotype Inference Tool von Peres, Ayelet, Gidoni, Moriah, Polak, Pazit, Yaari, Gur

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Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping von Gidoni, Moriah, Snir, Omri, Peres, Ayelet, Polak, Pazit, Lindeman, Ida, Mikocziova, Ivana, Sarna, Vikas Kumar, Lundin, Knut E. A., Clouser, Christopher, Vigneault, Francois, Collins, Andrew M., Sollid, Ludvig M., Yaari, Gur

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VDJbase: an adaptive immune receptor genotype and haplotype database von Omer, Aviv, Shemesh, Or, Peres, Ayelet, Polak, Pazit, Shepherd, Adrian J, Watson, Corey T, Boyd, Scott D, Collins, Andrew M, Lees, William, Yaari, Gur

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B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation von Stoler-Barak, Liat, Harris, Ethan, Peres, Ayelet, Hezroni, Hadas, Kuka, Mirela, Di Lucia, Pietro, Grenov, Amalie, Gurwicz, Neta, Kupervaser, Meital, Yip, Bon Ham, Iannacone, Matteo, Yaari, Gur, Crispino, John D., Shulman, Ziv

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Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations von Collins, Andrew M., Peres, Ayelet, Corcoran, Martin M., Watson, Corey T., Yaari, Gur, Lees, William D., Ohlin, Mats

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T cell receptor beta germline variability is revealed by inference from repertoire data von Omer, Aviv, Peres, Ayelet, Rodriguez, Oscar L, Watson, Corey T, Lees, William, Polak, Pazit, Collins, Andrew M, Yaari, Gur

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Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma von Rosenberg, Miriam I., Greenstein, Erez, Buchkovich, Martin, Peres, Ayelet, Santoni-Rugiu, Eric, Yang, Lei, Mikl, Martin, Vaksman, Zalman, Gibbs, David L., Reshef, Dan, Salovin, Amy, Irwin, Meredith S., Naranjo, Arlene, Ulitsky, Igor, de Alarcon, Pedro A., Matthay, Katherine K., Weigman, Victor, Yaari, Gur, Panzer, Jessica A., Friedman, Nir, Maris, John M.

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AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes von Collins, Andrew M, Ohlin, Mats, Corcoran, Martin, Heather, James M, Ralph, Duncan, Law, Mansun, Martínez-Barnetche, Jesus, Ye, Jian, Richardson, Eve, Gibson, William S, Rodriguez, Oscar L, Peres, Ayelet, Yaari, Gur, Watson, Corey T, Lees, William D

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A BALB/c IGHV Reference Set, Defined by Haplotype Analysis of Long-Read VDJ-C Sequences From F1 (BALB/c x C57BL/6) Mice von Jackson, Katherine J L, Kos, Justin T, Lees, William, Gibson, William S, Smith, Melissa Laird, Peres, Ayelet, Yaari, Gur, Corcoran, Martin, Busse, Christian E, Ohlin, Mats, Watson, Corey T, Collins, Andrew M

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Germline polymorphisms and alternative splicing of human immunoglobulin light chain genes von Mikocziova, Ivana, Peres, Ayelet, Gidoni, Moriah, Greiff, Victor, Yaari, Gur, Sollid, Ludvig M.

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An unbiased comparison of immunoglobulin sequence aligners von Konstantinovsky, Thomas, Peres, Ayelet, Polak, Pazit, Yaari, Gur

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A somatic hypermutation-based machine learning model stratifies individuals with Crohn's disease and controls von Safra, Modi, Werner, Lael, Peres, Ayelet, Polak, Pazit, Salamon, Naomi, Schvimer, Michael, Weiss, Batia, Barshack, Iris, Shouval, Dror S, Yaari, Gur

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Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions von Mikocziova, Ivana, Gidoni, Moriah, Lindeman, Ida, Peres, Ayelet, Snir, Omri, Yaari, Gur, Sollid, Ludvig M.

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A somatic hypermutation–based machine learning model stratifies individuals with Crohn's disease and controls von Safra, Modi, Werner, Lael, Peres, Ayelet, Polak, Pazit, Salamon, Naomi, Schvimer, Michael, Weiss, Batia, Barshack, Iris, Shouval, Dror S, Yaari, Gur

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Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data von Peres, Ayelet, Klein, Vered, Frankel, Boaz, Lees, William, Polak, Pazit, Meehan, Mark, Rocha, Artur, Correia Lopes, João, Yaari, Gur

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Commentary on Population matched loci: relevance in infectious diseases and vaccination studies in human populations von Collins, Andrew M, Peres, Ayelet, Corcoran, Martin M, Watson, Corey T, Yaari, Gur, Lees, William D, Ohlin, Mats

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IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data von Peres, Ayelet, Lees, William D, Rodriguez, Oscar L, Lee, Noah Y, Polak, Pazit, Hope, Ronen, Kedmi, Meirav, Collins, Andrew M, Ohlin, Mats, Kleinstein, Steven H, Watson, Corey T, Yaari, Gur

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FLAIRR-Seq: A Method for Single-Molecule Resolution of Near Full-Length Antibody H Chain Repertoires von Ford, Easton E, Tieri, David, Rodriguez, Oscar L, Francoeur, Nancy J, Soto, Juan, Kos, Justin T, Peres, Ayelet, Gibson, William S, Silver, Catherine A, Deikus, Gintaras, Hudson, Elizabeth, Woolley, Cassandra R, Beckmann, Noam, Charney, Alexander, Mitchell, Thomas C, Yaari, Gur, Sebra, Robert P, Watson, Corey T, Smith, Melissa L

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AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets von Lees, William D., Christley, Scott, Peres, Ayelet, Kos, Justin T., Corrie, Brian, Ralph, Duncan, Breden, Felix, Cowell, Lindsay G., Yaari, Gur, Corcoran, Martin, Karlsson Hedestam, Gunilla B., Ohlin, Mats, Collins, Andrew M., Watson, Corey T., Busse, Christian E.

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The bigger the problem the littler: When the scope of a problem makes it seem less dangerous von Eskreis-Winkler, Lauren, Troncoso Peres, Luiza Tanoue, Fishbach, Ayelet

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