The Epigenomic Landscape of Prokaryotes von Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J

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Transcriptional Regulation of Enhancers Active in Protodomains of the Developing Cerebral Cortex von Pattabiraman, Kartik, Golonzhka, Olga, Lindtner, Susan, Nord, Alex S., Taher, Leila, Hoch, Renee, Silberberg, Shanni N., Zhang, Dongji, Chen, Bin, Zeng, HongKui, Pennacchio, Len A., Puelles, Luis, Visel, Axel, Rubenstein, John L.R.

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Enhancers: five essential questions von Pennacchio, Len A., Bickmore, Wendy, Dean, Ann, Nobrega, Marcelo A., Bejerano, Gill

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Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease von Cohen, Jonathan C, Hobbs, Helen H, Romeo, Stefano, Kozlitina, Julia, Xing, Chao, Pertsemlidis, Alexander, Cox, David, Pennacchio, Len A, Boerwinkle, Eric

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Dlx1&2-Dependent Expression of Zfhx1b (Sip1, Zeb2) Regulates the Fate Switch between Cortical and Striatal Interneurons von McKinsey, Gabriel L., Lindtner, Susan, Trzcinski, Brett, Visel, Axel, Pennacchio, Len A., Huylebroeck, Danny, Higashi, Yujiro, Rubenstein, John L.R.

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Genomic views of distant-acting enhancers von Visel, Axel, Rubin, Edward M, Pennacchio, Len A

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Tissue-specific RNA expression marks distant-acting developmental enhancers von Wu, Han, Nord, Alex S, Akiyama, Jennifer A, Shoukry, Malak, Afzal, Veena, Rubin, Edward M, Pennacchio, Len A, Visel, Axel

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Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation von Preissl, Sebastian, Fang, Rongxin, Huang, Hui, Zhao, Yuan, Raviram, Ramya, Gorkin, David U., Zhang, Yanxiao, Sos, Brandon C., Afzal, Veena, Dickel, Diane E., Kuan, Samantha, Visel, Axel, Pennacchio, Len A., Zhang, Kun, Ren, Bing

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ChIP-seq accurately predicts tissue-specific activity of enhancers von Visel, Axel, Blow, Matthew J., Li, Zirong, Zhang, Tao, Akiyama, Jennifer A., Holt, Amy, Plajzer-Frick, Ingrid, Shoukry, Malak, Wright, Crystal, Chen, Feng, Afzal, Veena, Ren, Bing, Rubin, Edward M., Pennacchio, Len A.

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Genomic Patterns of De Novo Mutation in Simplex Autism von Turner, Tychele N., Coe, Bradley P., Dickel, Diane E., Hoekzema, Kendra, Nelson, Bradley J., Zody, Michael C., Kronenberg, Zev N., Hormozdiari, Fereydoun, Raja, Archana, Pennacchio, Len A., Darnell, Robert B., Eichler, Evan E.

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VISTA Enhancer Browser--a database of tissue-specific human enhancers von Visel, Axel, Minovitsky, Simon, Dubchak, Inna, Pennacchio, Len A

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Rare loss-of-function mutations in ANGPTL family members contribute to plasma triglyceride levels in humans von Romeo, Stefano, Yin, Wu, Kozlitina, Julia, Pennacchio, Len A, Boerwinkle, Eric, Hobbs, Helen H, Cohen, Jonathan C

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The changing mouse embryo transcriptome at whole tissue and single-cell resolution von He, Peng, Williams, Brian A., Trout, Diane, Marinov, Georgi K., Amrhein, Henry, Berghella, Libera, Goh, Say-Tar, Plajzer-Frick, Ingrid, Afzal, Veena, Pennacchio, Len A., Dickel, Diane E., Visel, Axel, Ren, Bing, Hardison, Ross C., Zhang, Yu, Wold, Barbara J.

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Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice von Cohen, Jonathan C, May, Dalit, Afzal, Veena, Gong, Elaine, Pennacchio, Len A, Zhu, Yiwen, Rubin, Edward M, Attanasio, Catia, Blow, Matthew J, Visel, Axel

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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen von Hess, Matthias, Sczyrba, Alexander, Egan, Rob, Kim, Tae-Wan, Chokhawala, Harshal, Schroth, Gary, Luo, Shujun, Clark, Douglas S., Chen, Feng, Zhang, Tao, Mackie, Roderick I., Pennacchio, Len A., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Wang, Zhong, Rubin, Edward M.

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Progressive Loss of Function in a Limb Enhancer during Snake Evolution von Kvon, Evgeny Z., Kamneva, Olga K., Melo, Uirá S., Barozzi, Iros, Osterwalder, Marco, Mannion, Brandon J., Tissières, Virginie, Pickle, Catherine S., Plajzer-Frick, Ingrid, Lee, Elizabeth A., Kato, Momoe, Garvin, Tyler H., Akiyama, Jennifer A., Afzal, Veena, Lopez-Rios, Javier, Rubin, Edward M., Dickel, Diane E., Pennacchio, Len A., Visel, Axel

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Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network In Hirschsprung Disease von Chatterjee, Sumantra, Kapoor, Ashish, Akiyama, Jennifer A., Auer, Dallas R., Lee, Dongwon, Gabriel, Stacey, Berrios, Courtney, Pennacchio, Len A., Chakravarti, Aravinda

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Germline Chd8 haploinsufficiency alters brain development in mouse von Gompers, Andrea L, Su-Feher, Linda, Ellegood, Jacob, Copping, Nycole A, Riyadh, M Asrafuzzaman, Stradleigh, Tyler W, Pride, Michael C, Schaffler, Melanie D, Wade, A Ayanna, Catta-Preta, Rinaldo, Zdilar, Iva, Louis, Shreya, Kaushik, Gaurav, Mannion, Brandon J, Plajzer-Frick, Ingrid, Afzal, Veena, Visel, Axel, Pennacchio, Len A, Dickel, Diane E, Lerch, Jason P, Crawley, Jacqueline N, Zarbalis, Konstantinos S, Silverman, Jill L, Nord, Alex S

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Perfect and imperfect views of ultraconserved sequences von Snetkova, Valentina, Pennacchio, Len A., Visel, Axel, Dickel, Diane E.

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Ultraconserved Enhancers Are Required for Normal Development von Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A., Harrington, Anne N., Pham, Quan T., Garvin, Tyler H., Kato, Momoe, Osterwalder, Marco, Akiyama, Jennifer A., Afzal, Veena, Rubenstein, John L.R., Pennacchio, Len A., Visel, Axel

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