Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease von Romeo, Stefano, Kozlitina, Julia, Xing, Chao, Pertsemlidis, Alexander, Cox, David, Pennacchio, Len A, Boerwinkle, Eric, Cohen, Jonathan C, Hobbs, Helen H

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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen von Hess, Matthias, Sczyrba, Alexander, Egan, Rob, Kim, Tae-Wan, Chokhawala, Harshal, Schroth, Gary, Luo, Shujun, Clark, Douglas S., Chen, Feng, Zhang, Tao, Mackie, Roderick I., Pennacchio, Len A., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Wang, Zhong, Rubin, Edward M.

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Genomic views of distant-acting enhancers von Visel, Axel, Rubin, Edward M., Pennacchio, Len A.

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ChIP-seq accurately predicts tissue-specific activity of enhancers von Visel, Axel, Blow, Matthew J., Li, Zirong, Zhang, Tao, Akiyama, Jennifer A., Holt, Amy, Plajzer-Frick, Ingrid, Shoukry, Malak, Wright, Crystal, Chen, Feng, Afzal, Veena, Ren, Bing, Rubin, Edward M., Pennacchio, Len A.

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Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation von Preissl, Sebastian, Fang, Rongxin, Huang, Hui, Zhao, Yuan, Raviram, Ramya, Gorkin, David U., Zhang, Yanxiao, Sos, Brandon C., Afzal, Veena, Dickel, Diane E., Kuan, Samantha, Visel, Axel, Pennacchio, Len A., Zhang, Kun, Ren, Bing

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Genomic Patterns of De Novo Mutation in Simplex Autism von Turner, Tychele N., Coe, Bradley P., Dickel, Diane E., Hoekzema, Kendra, Nelson, Bradley J., Zody, Michael C., Kronenberg, Zev N., Hormozdiari, Fereydoun, Raja, Archana, Pennacchio, Len A., Darnell, Robert B., Eichler, Evan E.

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Rare loss-of-function mutations in ANGPTL family members contribute to plasma triglyceride levels in humans von Romeo, Stefano, Yin, Wu, Kozlitina, Julia, Pennacchio, Len A, Boerwinkle, Eric, Hobbs, Helen H, Cohen, Jonathan C

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Tissue-specific RNA expression marks distant-acting developmental enhancers von Wu, Han, Nord, Alex S, Akiyama, Jennifer A, Shoukry, Malak, Afzal, Veena, Rubin, Edward M, Pennacchio, Len A, Visel, Axel

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Dlx1&2-Dependent Expression of Zfhx1b (Sip1, Zeb2) Regulates the Fate Switch between Cortical and Striatal Interneurons von McKinsey, Gabriel L., Lindtner, Susan, Trzcinski, Brett, Visel, Axel, Pennacchio, Len A., Huylebroeck, Danny, Higashi, Yujiro, Rubenstein, John L.R.

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The Epigenomic Landscape of Prokaryotes von Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J

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Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice von Visel, Axel, Zhu, Yiwen, May, Dalit, Afzal, Veena, Gong, Elaine, Attanasio, Catia, Blow, Matthew J., Cohen, Jonathan C., Rubin, Edward M., Pennacchio, Len A.

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The changing mouse embryo transcriptome at whole tissue and single-cell resolution von He, Peng, Williams, Brian A., Trout, Diane, Marinov, Georgi K., Amrhein, Henry, Berghella, Libera, Goh, Say-Tar, Plajzer-Frick, Ingrid, Afzal, Veena, Pennacchio, Len A., Dickel, Diane E., Visel, Axel, Ren, Bing, Hardison, Ross C., Zhang, Yu, Wold, Barbara J.

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Transcriptional Regulation of Enhancers Active in Protodomains of the Developing Cerebral Cortex von Pattabiraman, Kartik, Golonzhka, Olga, Lindtner, Susan, Nord, Alex S., Taher, Leila, Hoch, Renee, Silberberg, Shanni N., Zhang, Dongji, Chen, Bin, Zeng, HongKui, Pennacchio, Len A., Puelles, Luis, Visel, Axel, Rubenstein, John L.R.

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VISTA Enhancer Browser--a database of tissue-specific human enhancers von Visel, Axel, Minovitsky, Simon, Dubchak, Inna, Pennacchio, Len A

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Progressive Loss of Function in a Limb Enhancer during Snake Evolution von Kvon, Evgeny Z., Kamneva, Olga K., Melo, Uirá S., Barozzi, Iros, Osterwalder, Marco, Mannion, Brandon J., Tissières, Virginie, Pickle, Catherine S., Plajzer-Frick, Ingrid, Lee, Elizabeth A., Kato, Momoe, Garvin, Tyler H., Akiyama, Jennifer A., Afzal, Veena, Lopez-Rios, Javier, Rubin, Edward M., Dickel, Diane E., Pennacchio, Len A., Visel, Axel

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Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers von Gotea, Valer, Visel, Axel, Westlund, John M, Nobrega, Marcelo A, Pennacchio, Len A, Ovcharenko, Ivan

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Germline Chd8 haploinsufficiency alters brain development in mouse von Gompers, Andrea L, Su-Feher, Linda, Ellegood, Jacob, Copping, Nycole A, Riyadh, M Asrafuzzaman, Stradleigh, Tyler W, Pride, Michael C, Schaffler, Melanie D, Wade, A Ayanna, Catta-Preta, Rinaldo, Zdilar, Iva, Louis, Shreya, Kaushik, Gaurav, Mannion, Brandon J, Plajzer-Frick, Ingrid, Afzal, Veena, Visel, Axel, Pennacchio, Len A, Dickel, Diane E, Lerch, Jason P, Crawley, Jacqueline N, Zarbalis, Konstantinos S, Silverman, Jill L, Nord, Alex S

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Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network In Hirschsprung Disease von Chatterjee, Sumantra, Kapoor, Ashish, Akiyama, Jennifer A., Auer, Dallas R., Lee, Dongwon, Gabriel, Stacey, Berrios, Courtney, Pennacchio, Len A., Chakravarti, Aravinda

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Ultraconserved Enhancers Are Required for Normal Development von Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A., Harrington, Anne N., Pham, Quan T., Garvin, Tyler H., Kato, Momoe, Osterwalder, Marco, Akiyama, Jennifer A., Afzal, Veena, Rubenstein, John L.R., Pennacchio, Len A., Visel, Axel

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Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors von De Val, Sarah, Chi, Neil C., Meadows, Stryder M., Minovitsky, Simon, Anderson, Joshua P., Harris, Ian S., Ehlers, Melissa L., Agarwal, Pooja, Visel, Axel, Xu, Shan-Mei, Pennacchio, Len A., Dubchak, Inna, Krieg, Paul A., Stainier, Didier Y.R., Black, Brian L.

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