A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA‐seq profiling von Klepikova, Anna V., Kasianov, Artem S., Gerasimov, Evgeny S., Logacheva, Maria D., Penin, Aleksey A.

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Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus von Terekhanova, Nadezhda V, Logacheva, Maria D, Penin, Aleksey A, Neretina, Tatiana V, Barmintseva, Anna E, Bazykin, Georgii A, Kondrashov, Alexey S, Mugue, Nikolai S

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Paratrypanosoma Is a Novel Early-Branching Trypanosomatid von Flegontov, Pavel, Votýpka, Jan, Skalický, Tomáš, Logacheva, Maria D., Penin, Aleksey A., Tanifuji, Goro, Onodera, Naoko T., Kondrashov, Alexey S., Volf, Petr, Archibald, John M., Lukeš, Julius

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RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation von Klepikova, Anna V, Logacheva, Maria D, Dmitriev, Sergey E, Penin, Aleksey A

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Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data von Demidenko, Natalia V, Logacheva, Maria D, Penin, Aleksey A

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The Genome of Intoshia linei Affirms Orthonectids as Highly Simplified Spiralians von Mikhailov, Kirill V., Slyusarev, Georgy S., Nikitin, Mikhail A., Logacheva, Maria D., Penin, Aleksey A., Aleoshin, Vladimir V., Panchin, Yuri V.

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De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum) von Logacheva, Maria D, Kasianov, Artem S, Vinogradov, Dmitriy V, Samigullin, Tagir H, Gelfand, Mikhail S, Makeev, Vsevolod J, Penin, Aleksey A

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RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants von Schelkunov, Mikhail I, Penin, Aleksey A, Logacheva, Maria D

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Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae von Samigullin, Tahir H, Logacheva, Maria D, Penin, Aleksey A, Vallejo-Roman, Carmen M

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Origin and diversity of Capsella bursa-pastoris from the genomic point of view von Penin, Aleksey A, Kasianov, Artem S, Klepikova, Anna V, Omelchenko, Denis O, Makarenko, Maksim S, Logacheva, Maria D

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Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga von Vakhrusheva, Olga A., Mnatsakanova, Elena A., Galimov, Yan R., Neretina, Tatiana V., Gerasimov, Evgeny S., Naumenko, Sergey A., Ozerova, Svetlana G., Zalevsky, Arthur O., Yushenova, Irina A., Rodriguez, Fernando, Arkhipova, Irina R., Penin, Aleksey A., Logacheva, Maria D., Bazykin, Georgii A., Kondrashov, Alexey S.

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High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum von Penin, Aleksey A, Kasianov, Artem S, Klepikova, Anna V, Kirov, Ilya V, Gerasimov, Evgeny S, Fesenko, Aleksey N, Logacheva, Maria D

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Exploring the limits for reduction of plastid genomes: a case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum von Schelkunov, Mikhail I, Shtratnikova, Viktoria Yu, Nuraliev, Maxim S, Selosse, Marc-Andre, Penin, Aleksey A, Logacheva, Maria D

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Interspecific comparison of gene expression profiles using machine learning von Kasianov, Artem S, Klepikova, Anna V, Mayorov, Alexey V, Buzanov, Gleb S, Logacheva, Maria D, Penin, Aleksey A

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Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis von Kasianova, Aleksandra M, Penin, Aleksey A, Schelkunov, Mikhail I, Kasianov, Artem S, Logacheva, Maria D, Klepikova, Anna V

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Rapid Accumulation of Mutations in Growing Mycelia of a Hypervariable Fungus Schizophyllum commune von Bezmenova, Aleksandra V, Zvyagina, Elena A, Fedotova, Anna V, Kasianov, Artem S, Neretina, Tatiana V, Penin, Aleksey A, Bazykin, Georgii A, Kondrashov, Alexey S

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Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis von Logacheva, Maria D, Schelkunov, Mikhail I, Penin, Aleksey A

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The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences von Leushkin, Evgeny V, Sutormin, Roman A, Nabieva, Elena R, Penin, Aleksey A, Kondrashov, Alexey S, Logacheva, Maria D

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An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana von Klepikova, Anna V, Kulakovskiy, Ivan V, Kasianov, Artem S, Logacheva, Maria D, Penin, Aleksey A

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Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant Hypopitys monotropa , its structure, gene expression and RNA editing von Shtratnikova, Viktoria Yu, Schelkunov, Mikhail I., Penin, Aleksey A., Logacheva, Maria D.

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