Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database von Fortriede, Joshua D, Pells, Troy J, Chu, Stanley, Chaturvedi, Praneet, Wang, DongZhuo, Fisher, Malcom E, James-Zorn, Christina, Wang, Ying, Nenni, Mardi J, Burns, Kevin A, Lotay, Vaneet S, Ponferrada, Virgilio G, Karimi, Kamran, Zorn, Aaron M, Vize, Peter D

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Xenbase: a genomic, epigenomic and transcriptomic model organism database von Karimi, Kamran, Fortriede, Joshua D, Lotay, Vaneet S, Burns, Kevin A, Wang, Dong Zhou, Fisher, Malcom E, Pells, Troy J, James-Zorn, Christina, Wang, Ying, Ponferrada, V G, Chu, Stanley, Chaturvedi, Praneet, Zorn, Aaron M, Vize, Peter D

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Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms von Arshinoff, Bradley I, Cary, Gregory A, Karimi, Kamran, Foley, Saoirse, Agalakov, Sergei, Delgado, Francisco, Lotay, Vaneet S, Ku, Carolyn J, Pells, Troy J, Beatman, Thomas R, Kim, Eugene, Cameron, R Andrew, Vize, Peter D, Telmer, Cheryl A, Croce, Jenifer C, Ettensohn, Charles A, Hinman, Veronica F

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Echinobase: a resource to support the echinoderm research community von Telmer, Cheryl A, Karimi, Kamran, Chess, Macie M, Agalakov, Sergei, Arshinoff, Bradley I, Lotay, Vaneet, Wang, Dong Zhuo, Chu, Stanley, Pells, Troy J, Vize, Peter D, Hinman, Veronica F, Ettensohn, Charles A

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Xenbase: Facilitating the Use of Xenopus to Model Human Disease von Nenni, Mardi J, Fisher, Malcolm E, James-Zorn, Christina, Pells, Troy J, Ponferrada, Virgilio, Chu, Stanley, Fortriede, Joshua D, Burns, Kevin A, Wang, Ying, Lotay, Vaneet S, Wang, Dong Zhou, Segerdell, Erik, Chaturvedi, Praneet, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M

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Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef‐building coral von Wuitchik, Daniel M., Wang, DongZhuo, Pells, Troy J., Karimi, Kamran, Ward, Selina, Vize, Peter D.

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The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development von Fisher, Malcolm E, Segerdell, Erik, Matentzoglu, Nicolas, Nenni, Mardi J, Fortriede, Joshua D, Chu, Stanley, Pells, Troy J, Osumi-Sutherland, David, Chaturvedi, Praneet, James-Zorn, Christina, Sundararaj, Nivitha, Lotay, Vaneet S, Ponferrada, Virgilio, Wang, Dong Zhuo, Kim, Eugene, Agalakov, Sergei, Arshinoff, Bradley I, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M

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Harmonizing structural mass spectrometry analyses in the mass spec studio von Ziemianowicz, Daniel S., Sarpe, Vladimir, Crowder, D.Alex, Pells, Troy J., Raval, Shaunak, Hepburn, Morgan, Rafiei, Atefeh, Schriemer, David C.

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Classifying domain-specific text documents containing ambiguous keywords von Karimi, Kamran, Agalakov, Sergei, Telmer, Cheryl A., Beatman, Thomas R., Pells, Troy J., Arshinoff, Bradley I. M., Ku, Carolyn J., Foley, Saoirse, Hinman, Veronica F., Ettensohn, Charles A., Vize, Peter D.

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Xenbase: key features and resources of the Xenopus model organism knowledgebase von Fisher, Malcolm, James-Zorn, Christina, Ponferrada, Virgilio, Bell, Andrew J, Sundararaj, Nivitha, Segerdell, Erik, Chaturvedi, Praneet, Bayyari, Nadia, Chu, Stanley, Pells, Troy, Lotay, Vaneet, Agalakov, Sergei, Wang, Dong Zhuo, Arshinoff, Bradley I, Foley, Saoirse, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M

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IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics von Ziemianowicz, Daniel S., Saltzberg, Daniel, Pells, Troy, Crowder, D. Alex, Schräder, Christoph, Hepburn, Morgan, Sali, Andrej, Schriemer, David C.

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Updates to the Alliance of Genome Resources central infrastructure von Aleksander, Suzanne A, Anagnostopoulos, Anna V, Antonazzo, Giulia, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Cherry, J Michael, Cho, Jaehyoung, Crosby, Madeline A, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Dyer, Sarah, Ebert, Dustin, Engel, Stacia R, Fashena, David, Fisher, Malcolm, Foley, Saoirse, Gibson, Adam C, Gollapally, Varun R, Gramates, L Sian, Grove, Christian A, Hale, Paul, Harris, Todd, Hayman, G Thomas, Hu, Yanhui, James-Zorn, Christina, Karimi, Kamran, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Markarian, Nicholas, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S, Nuin, Paulo, Paddock, Holly, Pells, Troy, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schindelman, Gary, Shaw, David R, Sherlock, Gavin, Shrivatsav, Ajay, Singer, Amy, Smith, Constance M, Smith, Cynthia L, Smith, Jennifer R, Stein, Lincoln, Sternberg, Paul W, Tabone, Christopher J, Thomas, Paul D, Thorat, Ketaki, Thota, Jyothi, Tomczuk, Monika, Trovisco, Vitor, Tutaj, Marek A, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E, Vize, Peter D, Wang, Qinghua, Weng, Shuai, Westerfield, Monte, Wilming, Laurens G, Wong, Edith D, Wright, Adam, Yook, Karen, Zhou, Pinglei, Zorn, Aaron

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Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database von James-Zorn, Christina, Ponferrada, Virgilio, Fisher, Malcolm E., Burns, Kevin, Fortriede, Joshua, Segerdell, Erik, Karimi, Kamran, Lotay, Vaneet, Wang, Dong Zhuo, Chu, Stanley, Pells, Troy, Wang, Ying, Vize, Peter D., Zorn, Aaron

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Classifying domain-specific text documents containing ambiguous keywords von Karimi, Kamran, Agalakov, Sergei, Telmer, Cheryl A., Beatman, Thomas R., Pells, Troy J., Arshinoff, Bradley I. M., Ku, Carolyn J., Foley, Saoirse, Hinman, Veronica F., Ettensohn, Charles A., Vize, Peter D.

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Data from: Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral von Wuitchik, Daniel M., Wang, DongZhuo, Pells, Troy J., Karimi, Kamran, Ward, Selina, Vize, Peter D.

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expDesign von Wuitchik, Daniel, Wang, DongZhuo, Pells, Troy, Karimi, Kamran, Ward, Selina, Vize, Peter

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normalized_counts von Wuitchik, Daniel, Wang, DongZhuo, Pells, Troy, Karimi, Kamran, Ward, Selina, Vize, Peter

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Wuitchik2019_supplementary_data_april23 von Wuitchik, Daniel, Wang, DongZhuo, Pells, Troy, Karimi, Kamran, Ward, Selina, Vize, Peter

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amil_v102 von Wuitchik, Daniel, Wang, DongZhuo, Pells, Troy, Karimi, Kamran, Ward, Selina, Vize, Peter

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Additional file 3 of The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development von Fisher, Malcolm E., Segerdell, Erik, Matentzoglu, Nicolas, Nenni, Mardi J., Fortriede, Joshua D., Chu, Stanley, Pells, Troy J., Osumi-Sutherland, David, Chaturvedi, Praneet, James-Zorn, Christina, Sundararaj, Nivitha, Lotay, Vaneet S., Ponferrada, Virgilio, Wang, Dong Zhuo, Kim, Eugene, Agalakov, Sergei, Arshinoff, Bradley I., Karimi, Kamran, Vize, Peter D., Zorn, Aaron M.

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